Complex Systems Summer SChool 2013-Lecture Readings: Difference between revisions
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{{Complex Systems Summer School 2013}} | {{Complex Systems Summer School 2013}} | ||
==Sander Bais== | |||
[[Media:Sanderslides.pdf | Symmetries Lecture]]<br> | |||
==Liz Bradley== | ==Liz Bradley== | ||
| Line 12: | Line 16: | ||
[[Media:Ida-chapter.pdf | Time Series Analysis]]<br> | [[Media:Ida-chapter.pdf | Time Series Analysis]]<br> | ||
[[Media:Ode.pdf | Numerical Solution of Differential Equations]] | [[Media:Ode.pdf | Numerical Solution of Differential Equations]] | ||
==Aaron Clauset== | |||
Lectures 1-2: http://bit.ly/14uNw3N<br> | |||
Lecture 3: http://bit.ly/19DBuZj<br> | |||
Lecture 4: http://bit.ly/10mgYJZ<br> | |||
==Jim Crutchfield== | |||
The Complexity lecture PDFs (2) are here:<br> | |||
[http://csc.ucdavis.edu/~chaos/share/CSSSInfoThComplexSystems.pdf Complexity Lecture Slides 1]<br> | |||
[http://csc.ucdavis.edu/~chaos/share/CSSSIntrinsicComp.pdf Complexity Lecture Slides 2]<br> | |||
Interactive HTML versions (with all animations) are here:<br> | |||
[http://csc.ucdavis.edu/~chaos/share/CSSSInfoThComplexSystems/ Complexity Lecture Slides 1]<br> | |||
[http://csc.ucdavis.edu/~chaos/share/CSSSIntrinsicComp/ Complexity Lecture Slides 2]<br> | |||
==Jennifer Dunne== | |||
[[Media:ecolnetworks.pdf |Ecological Network Structure & Dynamics Lecture Slides]] | |||
==Jessica Flack== | |||
[[Media:jflacks.pdf |Papers and books of interest in the robustness literature]] | |||
==John Harte== | ==John Harte== | ||
| Line 18: | Line 48: | ||
==Alfred Hubler== | ==Alfred Hubler== | ||
[[Media:CSSS2013Talk1.ppt|Talk 1]]<br> | |||
[[Media:CSSS2013Talk2.ppt|Talk 2]]<br> | |||
[[Media:CSSS2013LabManual.pdf|Lab Manual]]<br> | |||
==Melanie Mitchell== | ==Melanie Mitchell== | ||
| Line 61: | Line 95: | ||
[[Media:reading13pascual.pdf |The Roles of Competition and Mutation in Shaping Antigenic and Genetic Diversity in Influenza - Daniel Zinder, Trevor Bedford, Sunetra Gupta, | [[Media:reading13pascual.pdf |The Roles of Competition and Mutation in Shaping Antigenic and Genetic Diversity in Influenza - Daniel Zinder, Trevor Bedford, Sunetra Gupta, | ||
Mercedes Pascual]] <br> | Mercedes Pascual]] <br> | ||
==Cris Moore== | |||
[[Media:Csss-quantum (1).pdf| Quantum Computing]]<br> | |||
[[Media:Csss12-phase.pdf|Phase Transitions]]<br> | |||
[[Media:Csss12-algorithms.pdf|Algorithms and Landscapes]]<br> | |||
==Cosma Shalizi== | |||
[[Media:lecture1shalizi.pdf |Lecture 1]] <br> | |||
[[Media:lecture2shalizi.pdf |Lecture 2]] <br> | |||
[http://www.stat.cmu.edu/~cshalizi/uADA/13/ Advanced Data Analysis] | |||
[http://www.stat.cmu.edu/~cshalizi/ADAfaEPoV/ Advanced Data Analysis from an Elementary Point of View] | |||
[http://www.stat.cmu.edu/~cshalizi/462/syllabus.html Syllabus with Slides] | |||
==Andreas Wagner== | ==Andreas Wagner== | ||
[[Media:awslides.pdf | Lecture Slides, Evolution and genotype networks | [[Media:awslides.pdf | Lecture Slides, Evolution and genotype networks]] | ||
==Simon DeDeo== | |||
[http://tuvalu.santafe.edu/~simon/page6/page6.html References and Bibliography for Emergence and Reductionism talks] | |||
Latest revision as of 21:27, 27 June 2013
| Complex Systems Summer School 2013 |
Sander Bais
Liz Bradley
Slides
Syllabus
Lecture 1 (Introduction to Nonlinear Dynamics, Maps)
Lecture2 (Flows)
Complete Slides
Notes
Time Series Analysis
Numerical Solution of Differential Equations
Aaron Clauset
Lectures 1-2: http://bit.ly/14uNw3N
Lecture 3: http://bit.ly/19DBuZj
Lecture 4: http://bit.ly/10mgYJZ
Jim Crutchfield
The Complexity lecture PDFs (2) are here:
Complexity Lecture Slides 1
Complexity Lecture Slides 2
Interactive HTML versions (with all animations) are here:
Complexity Lecture Slides 1
Complexity Lecture Slides 2
Jennifer Dunne
Ecological Network Structure & Dynamics Lecture Slides
Jessica Flack
Papers and books of interest in the robustness literature
John Harte
Alfred Hubler
Melanie Mitchell
Slides
Lecture 1, Biologically Inspired
Computing
Lecture 2, Simple models of self-organization
and emergence
Video: What are Complex Systems?
NetLogo Files
Ants
Fireflies
Flocking
Preferential Attachment
Robby the Robot GA's
Mercedes Pascual
Slides
Lecture 1, Macroscopic patterns in pathogen diversity form an ecological perspective
Lecture 2, Anticipating critical transitions
Additional Reading
Canalization of the evolutionary trajectory of the
human influenza virus- Trevor Bedford, Andrew Rambaut, and Mercedes Pascual
Quantifying limits to detection of early warning for critical transitions -Carl Boettiger and Alan Hastings
From patterns to predictions - Carl Boettiger and Alan Hastings
Robust scaling in ecosystems and the meltdown of patch size distributions
before extinction - Sonia Kefi, Max Rietkerk, Manojit Roy, Alain Franc, Peter C. de Ruiter, and Mercedes Pascual
Forecasting a class of bifurcations: Theory and experiment - Joosup Lim
and Bogdan I. Epureanu
ALTERNATIVE STABLE STATES IN EUTROPHIC,
SHALLOW FRESHWATER SYSTEMS: A MINIMAL MODEL - M. SCHEFFER
Early-warning signals for critical transitions - Marten Scheffer et al.
Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans - Katia Koelle et al.
Anticipating Critical Transitions - Marten Scheffer et al
Appendix: Slow Recovery from Perturbations as a Generic Indicator of a Nearby Catastrophic Shift - E. H. van Nes and M. Scheffer
Slow Recovery from Perturbations as a Generic Indicator of a Nearby Catastrophic Shift. - Egbert H. van Nes and Marten Scheffer
Understanding Shifts in Wildfire Regimes as Emergent Threshold Phenomena. - Richard D. Zinck, Mercedes Pascual, and Volker Grimm
The Roles of Competition and Mutation in Shaping Antigenic and Genetic Diversity in Influenza - Daniel Zinder, Trevor Bedford, Sunetra Gupta,
Mercedes Pascual
Cris Moore
Quantum Computing
Phase Transitions
Algorithms and Landscapes
Cosma Shalizi
Advanced Data Analysis from an Elementary Point of View
Andreas Wagner
Lecture Slides, Evolution and genotype networks
Simon DeDeo
References and Bibliography for Emergence and Reductionism talks