Complex Systems Summer SChool 2013-Lecture Readings

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Liz Bradley

Slides

Syllabus
Lecture 1 (Introduction to Nonlinear Dynamics, Maps)
Lecture2 (Flows) Complete Slides

Notes

Time Series Analysis
Numerical Solution of Differential Equations

John Harte

John Harte Slides

Melanie Mitchell

NetLogo Files:
Ants
Fireflies
Flocking
Preferential Attachment
Robby the Robot GA's

Mercedes Pascual

Slides

Lecture 1
Lecture 2

Additional Reading

Canalization of the evolutionary trajectory of the human influenza virus- Trevor Bedford, Andrew Rambaut, and Mercedes Pascual
Quantifying limits to detection of early warning for critical transitions -Carl Boettiger and Alan Hastings
From patterns to predictions - Carl Boettiger and Alan Hastings
Robust scaling in ecosystems and the meltdown of patch size distributions before extinction - Sonia Kefi, Max Rietkerk, Manojit Roy, Alain Franc, Peter C. de Ruiter, and Mercedes Pascual
Forecasting a class of bifurcations: Theory and experiment - Joosup Lim and Bogdan I. Epureanu
ALTERNATIVE STABLE STATES IN EUTROPHIC, SHALLOW FRESHWATER SYSTEMS: A MINIMAL MODEL - M. SCHEFFER
Early-warning signals for critical transitions - Marten Scheffer et al.
Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans - Katia Koelle et al.
Anticipating Critical Transitions - Marten Scheffer et al
Appendix: Slow Recovery from Perturbations as a Generic Indicator of a Nearby Catastrophic Shift - E. H. van Nes and M. Scheffer
Slow Recovery from Perturbations as a Generic Indicator of a Nearby Catastrophic Shift. - Egbert H. van Nes and Marten Scheffer
Understanding Shifts in Wildfire Regimes as Emergent Threshold Phenomena. - Richard D. Zinck, Mercedes Pascual, and Volker Grimm
The Roles of Competition and Mutation in Shaping Antigenic and Genetic Diversity in Influenza - Daniel Zinder, Trevor Bedford, Sunetra Gupta, Mercedes Pascual

Andreas Wagner

Andreas Wagner Slides