Complex Systems Summer School 2012-Project Presentations
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|Complex Systems Summer School 2012|
Use this space to post project presentations and outlines. Include group members, a brief outline, and your slides.
- 1 The Robustness, Stability and Persistence of Niche-Structured Food Webs
- 2 Political prediction markets: Can we use them to predict election outcomes?
- 3 How Complex Languages Replicate through Simple Brains
- 4 Collaboration in times of stress: an Agent Based Modelling approach
- 5 Simple variation of the logistic map as a model to invoke questions on cellular protein trafficking
- 6 Changes in Social Network Structure in Response to Crisis: Using Twitter data to Explore the Effect of the Tōhoku Earthquake.
- 7 The CSSS Network
- 8 Is there a method in the madness? the dynamic structures of human language use
- 9 Escaping the Poverty Trap: Modeling the Interplay Between Economic Growth and the Ecology of Infectious Disease
- 10 The Targeting and Timing of Treatment Influences the Emergence of Influenza Resistance in Structured Populations
- 11 Learning in Random Boolean Networks
- 12 Enzyme Catalysis and the Outcome of Chemical Reactions
- 13 How Does a Stochastic Environment affect Community Assembly?
- 14 How Does a Network’s Structure Influence its Traceability?
- 15 We Got the Skills to Pay the Bills: Exploring the Link Between Occupation Diversity and Innovation
- 16 Space of complex networks and robustness
- 17 Trade network formation: the role of technology and geography
- 18 Cultural Evolution of Literary Genres
- 19 Emergence of Money through an agent based model
- 20 Level-k thinking, collective behavior, and limit cycles
The Robustness, Stability and Persistence of Niche-Structured Food Webs
Si, Miguel, Hide, Sarah
We are interested in the properties of food webs, a network structure describing who eats whom within an ecological community. In 2000, William and Martinez proposed the niche model, which generates synthetic food web structures by ordering species according to ‘niche values’ and assigning trophic relationships by allowing consumers to feed on the species whose niche values fall within a particular range. The niche model has successfully replicated many properties of empirical food webs.
However, whether the niche organization in food webs tends to produce more diverse, stable, robust and persistent communities remains unknown. In this study, we randomly generated food webs in which predator-prey links are formed according to the niche model and contrasted these with unstructured food webs in which predator-prey links are randomly assigned among species. We used the bioenergetic model to produce persisting food webs of both structural types. In the presentation on Friday, we will show a few preliminary results, such as the difference of the two types of food webs in complexity, robustness and stability.
Human impacts upon ecosystems – for example, the introduction of invasive species or the disturbance of the system and subsequent loss of species – may lead to collapse of entire ecological communities. We will continue to explore the persistence of these dynamic food webs under environmental perturbation after the summer school. We also plan to explore a separate structural model to study how the evolution of networks on both micro- and macroevolutionary timescales could possibly contribute to stability.
Political prediction markets: Can we use them to predict election outcomes?
Joanne, Vikram, Matteo, Sanith
Prediction markets have been shown to outperform traditional methods of polls and opinion surveys in forecasting future events. The futures contracts traded in these markets assess the expectation of occurrence of a variety of events spread across multiple domains (political, economic, entertainment, financial and weather). We explore the feasibility of 'predicting' the outcome of binary true/false prediction market contracts ahead of their expiry date using a neural-network based machine learning approach. In addition we focus on the characteristics of political-based contracts to establish whether they exhibit characteristic 'fundamental' properties.
How Complex Languages Replicate through Simple Brains
Katrien, Vanessa, Sandro, Cameron, Jasmeen
Through the use of an iterated learning experiment, we investigated the transmission of a "high entropy", randomised initial language through successive generations of participants. We want to see what features of the language replicated most easily, and what structure emerged by the end of the chain. Our hypothesis is that the language converges to a "low entropy" equilibrium state with a minimal number of words, morphemes, and form-meaning distinctions.
Collaboration in times of stress: an Agent Based Modelling approach
Fabio the Duke of Aleina, Elena, Tom and Friederike
We want to investigate the influence of exogenous stress on cooperative behaviour. We propose an agent based model in which the agents can be interpreted as farmers living in a water limited environment. With changes in precipitation patterns, the farmers undergo stress, and we observe how this impacts relationships among farmers and their properties.
Simple variation of the logistic map as a model to invoke questions on cellular protein trafficking
(Sepehr Ehsani, http://arxiv.org/abs/1206.5557)
Many open problems in biology, as in the physical sciences, display nonlinear and 'chaotic' dynamics, which, to the extent possible, cannot be reasonably understood. Moreover, mathematical models which aim to predict/estimate unknown aspects of a biological system cannot provide more information about the set of biologically meaningful (e.g., 'hidden') states of the system than could be understood by the designer of the model ab initio. Here, the case is made for the utilization of such models to shift from a 'predictive' to a 'questioning' nature, and a simple natural-logarithm variation of the logistic polynomial map is presented that can invoke questions about protein trafficking in eukaryotic cells.
Changes in Social Network Structure in Response to Crisis: Using Twitter data to Explore the Effect of the Tōhoku Earthquake.
Christa Brelsford and Xin Lu
Abstract: We use twitter data from 7 days before and after the Tōhoku Earthquake to explore how cooperation rates, social network structure and connectivity, and social network vulnerability changed in Japan in response to the disaster. An English language data set is collected for the same time period to use as a control. Data is collected for a period of 96 hours starting from March 4th 2011 2:46pm JST and for 96 hours beginning March 11th 2011 2:46 pm JST. The rate of cooperative behavior, measured by the occurrence of helping words in tweets increases slightly in the English dataset and by an order of magnitude in the Japanese dataset. A network analysis is also performed. Network edges are retweets and direct messages. In future work, we hope to explore whether problem solving capacity in a social system changes in response to crises, based on changes in the rate of cooperation and information transfer in a network.
The CSSS Network
Tom & Riccardo (with JP and others)
We will investigate the questions you are dying to know: What interesting interactions are revealed from the first 3 weeks of the Complex System Summer School survey? Have barriers between academic disciplines been broken down? Do power laws fit the data!? ...
Let us know if you have specific questions or if you would like to be involved in data analysis!
Is there a method in the madness? the dynamic structures of human language use
Priya and Riccardo
Psychiatric anecdotal reports point to the monotony, lack of emotion and sometimes intelligibility in many clinical populations. Linear measures of fluency and prosody, however, present only controversial differences between patients and healthy controls and only in unnatural phonations (i.e. say "aaaaa" for 30 secs). We therefore go complex and chaotic on a set of more ecological recordings and transcriptions from 4 clinical populations (Asperger's, Schizophrenics, Depressed and Right Hemisphere Damage patients) as well as from healthy controls. We then set a classifier-driven race: will non-linear analyses outcompete linear analyses in discriminating between pathologies?
Escaping the Poverty Trap: Modeling the Interplay Between Economic Growth and the Ecology of Infectious Disease
Georg, Ben, Laurent, Oscar
The dynamics of economies and infectious disease are inexorably linked: economic well-being influences health (sanitation, nutrition, etc) and health influences economic well-being (labor productivity lost to sickness and disease). Often societies are locked into "poverty traps" of poor health and poor economy. Here, we demonstrate poverty traps formed in models of infection and endogenous growth, as well as ways to break out of poverty traps. We explore two mechanisms of escape: one, through an influx of capital, and another through changing the percentage of GDP spent on healthcare. We find large influxes of capital is successful, but increasing health spending does not. Our results have important policy implications in the distribution of aid and within-country healthcare spending.
The Targeting and Timing of Treatment Influences the Emergence of Influenza Resistance in Structured Populations
Ben, Laurent, Oscar, Georg
Evolution of antiviral resistance in influenza carries large societal impacts through morbidity and mortality caused by treatment failure. Several previous studies put forth theory regarding the optimal timing, targeting and absolute level of treatment in populations. Few of these studies, however, have considered populations with explicit structure. Here we present a model of antiviral resistance on networks and explore the timing, targeting and levels of treatment. Interestingly, we find bistability as a result of treatment leading to the existence of an unstable manifold, above which successful treatment (i.e.: no resistance) is impossible. We find, contrary to previous results, that degree-targeted treatment is not optimal, and leads to higher levels of resistance than random treatment. Additionally, in accordance with previous results, we find an optimum level of treatment which is less than 100%. These findings findings have important consequences in guiding policy behind influenza treatment. The bistability indicates that caution should be taken when treating populations when the absolute numbers of infections are unknown. Positively, our results indicate that putting resources into targeted treatment is not necessary, random treatment is preferable.
Learning in Random Boolean Networks
Nick A., Keegan, Matteo, Vikram, Sarah, Mark
Inspired by biochemical networks which adapt on evolutionary timescales, neural networks that adapt during development and learning, and universal computation in cellular automata, we have implemented several models of learning in Random Boolean Networks (RBNs) in order to better understand the relationships between network structure, node interaction rules, and network output.
Enzyme Catalysis and the Outcome of Chemical Reactions
Piotr and Georg W. Enzymes are catalysts that accelerate chemical reactions but do not affect their outcome. This traditional paradism was developed under artificail test tube conditions. Our project investigates the possibility that the presence of an enzyme can alter the course of a reaction if it takes place under more physiologic conditions.
How Does a Stochastic Environment affect Community Assembly?
Xue, Χλοε, Xiaoli
We are interested in how exogenous temporal variability in resource availability affects the community structure of organisms with different resource-use strategies. Organisms induce additional resource stress on each other through competition. This is an abstraction of an arid environment with unreliable rainfall; the organisms themselves have been abstracted to four unitless parameters that allocate their resources to different parts of their lifecycles. The system has memory, as the previous presence of an organism affects the resource transport mechanism (an abstraction of soil).
How Does a Network’s Structure Influence its Traceability?
Xin and Abby
We are interested in systematically studying the problem of finding the source of a contamination spread through a network. We model a contamination spreading through the food distribution network, which we represent by interconnections between farmers, distributors, and retailers, and construct an estimator for the outbreak source given only this structure. We show how the ability of the estimator to narrow down the source identification problem changes with the connectivity and the number of observations. We propose a measure for traceability, or the overall ability to identify the source of spreading given any set of outbreak observations, based on entropy. We show how this measure appropriately reflects the range of uncertainty in identifying the source. We believe this measure may be useful in the design of networks that are conducive to accurate identification of the source of contamination.
We Got the Skills to Pay the Bills: Exploring the Link Between Occupation Diversity and Innovation
Andrés, Charlie, Gareth, and Nick
Where does diversity in skills or occupations come from and why does it lead to more innovative cities? Previous work in this area has shown that there is a scaling behaviour which allows citizens of larger cities to earn an extra 15% in income whilst making use of 15% fewer gas stations, for example. Making use of occupation, patent, and population data of US Metropolitan Statistical Areas (MSA), we try to understand what factors make successful cities. Here we assume that successful cities are those cities which are most innovative as determined by the production of patents. In addition we use agent-based modelling to explore how and why people acquire new skills and whether this leads to more productive cities.
Space of complex networks and robustness
Ian, Marco, Xin, and Oleksandr
Complex networks have various properties which can be measured in real networks (WWW, social networks, biological networks), e.g. degree distribution, modularity, hierarchy, assortativity etc. Robustness of complex networks is a big question, however only some progress have been done in this direction. For example, it was shown that the scale-free networks are much more topologically robust to random attacks than random networks. Various characteristics of complex networks might influence the robustness differently. The question is how?
We generated continuous topological space of networks with respect to degree distribution (from random to scale-free) and clustering (from none to high). Then we attacked the network by removing vertices randomly and highly connected (hubs). The next step is to calculate network robustness, it is non-trivial task because there are many different ways to do it. So far we calculate the size of giant component during attack process for the entire space.
Trade network formation: the role of technology and geography
Marco and Matteo
Geography and technology play important roles in economic activities, e.g. international trade flows diminish dramatically with distance; salaries, prices, and factor endowments vary across locations; and productivities are really different across countries' industries. International trade theories have gained some non-negligible reputation explaining the sizes of aggregated trade flows, nonetheless few attention has being payed to the formation of the bilateral trade relations. We develop a network formation model that incorporates differences in technological capabilities across countries and the effect of the geographical distance as a proxy of trade barriers.
Cultural Evolution of Literary Genres
Graham, Dan, Benji
Summary: This project explores the dynamics of cultural evolution using a case study: the rise and differentiation of literary genres. Genres are modeled as feature sets that may undergo gene-like mutations and are subject to the selective pressure of consumer preferences. We also hope to include the impact of institutional actors.
Methods: Agent Based Modeling, Genetic Algorithms, Cluster Analysis, Phylogenetics
Emergence of Money through an agent based model
Aleksandra, David, Jianfeng, Vikram
Ultimate goal of the project is to generate the emergence of money in an economy where there are fundamental limits on the ability of agents to commit. Currently we have completed the first 2 of the 4 parts of our ABM. Our most basic model provides a nice example (we think) of a phase transition.
Level-k thinking, collective behavior, and limit cycles
Seth, Daniel, Cameron
What do all those things have in common? That's what we're trying to figure out. The sub-presentations of this project are satellites around an experimental result showing that the individual-level heuristic adjustment of what-you-think-I-think-you-think behavior leads to a group-level collective behavior that drives a periodic trajectory through the strategy space of Rock-Paper-Scissors. We will have an analysis of the data, an agent-based model establishing sufficient conditions, and a sketch of an analytic result modeling this phenomenon as symmetry-breaking.