2015 Complexity and Modeling Program Readings: Difference between revisions

@@ Line 5: / Line 5: @@
 ==Readings and Materials==
-===Resources===
+'''[http://santafe.edu/ Santa Fe Institute Website]'''<br>
+===Complexity Resources===
-'''[http://fractalfoundation.org/ Fractal Foundation]''' <br>
-'''[http://santafe.edu/ Santa Fe Institute Website]'''<br>
 '''[http://www.complexityexplorer.org/online-courses/11 Introduction to Complexity Online Videos]'''<br>
 '''[http://www.complexityexplorer.org/explore/glossary Complexity Explorer Terms Glossary]'''<br>
@@ Line 14: / Line 14: @@
 '''[https://www.youtube.com/user/santafeinst A huge online archive of Santa Fe Institute YouTube Videos]'''<br>
 '''[http://www.complexityexplorer.org/explore/resources Background Reading on Complexity]'''<br>
-'''[http://tuvalu.santafe.edu/projects/musicplusmath/ Music + Math Website!]'''<br>
 ===General Agent-Based Modeling===
-[[Media:Axtell,_et_al_-_Aligning_Simulation_Models.pdf | Aligning Simulation Models - Axtell et al.]]
+<!-- [[Media:Axtell,_et_al_-_Aligning_Simulation_Models.pdf | Aligning Simulation Models - Axtell et al.]]
+ -->
+<!-- [[Media:Epstein_-_Agent-based_Generative_Social_Science.pdf | Agent-Based Generative Social Science - Epstein‎]] -->
+<!-- [[Media:Epstein,_Steinbruner,_Parker_-_Modeling_Civil_Violence.pdf | Modeling Civil Violence - Epstein‎]] -->
+<!-- [[Media:Gajardo,_Moreira,_Goles_-_Complexity_of_Langton's_Ant.pdf | Complexity of Langton's Ant - Gajardo, Moreira, and Goles]] -->
+===Probability Puzzles===
-[[Media:Epstein_-_Agent-based_Generative_Social_Science.pdf | Agent-Based Generative Social Science - Epstein‎]]
+Puzzle #1 [[Media:UnfairCoin.pdf | The Unfair Coin]]‎
-[[Media:Epstein,_Steinbruner,_Parker_-_Modeling_Civil_Violence.pdf | Modeling Civil Violence - Epstein‎]]
+Puzzle #2 [[Media:ProblemofPoints.pdf | Problem of points]]‎
-[[Media:Gajardo,_Moreira,_Goles_-_Complexity_of_Langton's_Ant.pdf | Complexity of Langton's Ant - Gajardo, Moreira, and Goles]]
+Puzzle #3 [[Media:ProbabilityPuzzles.pdf | Dice Exercises]]‎
 ===Ecological Modeling===
@@ Line 33: / Line 41: @@
 [[Media:Kerr,_et_al_-_Local_dispersal_promotes_biodiversity_in_rock-paper-scissors.pdf | Rock Paper Scissors in Bacteria & Biodiversity - Kerr et al.]]‎
-[[Media:Szabo,_Szolnoki,_Izsak_-_RPS_on_Small_World_Networks.pdf | RPS on a Small World Network - Szabo, Szolnoki, Izsak]]
+[[Media:Kircher_-_Emergent_Behavior_of_Rock-Paper-Scissors_Game.pdf‎ | Emergent Behavior of Rock Paper Scissors - Kircher]]
-[[Media:Kircher_-_Emergent_Behavior_of_Rock-Paper-Scissors_Game.pdf‎ | Emergent Behavior of Rock Paper Scissors - Kircher]]
+[[Media:Bennett - Rock Paper Scissors.pdf | Rock-Paper-Scissors Ecosystem]]
-===Flocking===
+<!-- ===Flocking===
 [[Media:Feder_-_Statistical_Physics_is_for_the_Birds.pdf | Statistical Physics is for the Birds - Feder ]]
@@ Line 45: / Line 53: @@
 [[Media:Reynolds_-_Flocks,_Herds,_and_Schools.PDF | Flocks, Herds, and Schools - Reynolds]]‎
-===Peppered Moths: Melanism and Evolution===
+-->
+<!-- ===Peppered Moths: Melanism and Evolution===
 [[Media:melanism.pdf | Fine-tuning the Peppered Moth Paradigm - Grant ]]
@@ Line 52: / Line 62: @@
 [[Media:Swedentalk220807.pdf | The Peppered Moth: The Proof of Darwinian Evolution - Majerus ]]
+-->
 ===Chaos Theory===
@@ Line 59: / Line 71: @@
 ===Networks===
-[[Media:Dunne_-_Encyclopedia_of_Complex_Systems,_Food_Webs.pdf | Food Webs - Dunne]]
-===Ants===
+<!-- [[Media:Dunne_-_Encyclopedia_of_Complex_Systems,_Food_Webs.pdf | Food Webs - Dunne]] -->
-[[Media:Dorigo,_Maniezzo,_Colorni_-_The_Ant_System_-_Optimization_by_a_colony_of_cooperating_agents.pdf‎ | The Ant System: Optimization by a Colony of Cooperating Agents - Dorigo, Maniezzo, Colorni ]]
-===Modeling Complexity in Evolution===
-==== Schedule and handouts ====
-* [[Media:schedule.pdf|Schedule]]
-* [[Media:netlogo_day1_drift-mutation.pdf|Netlogo - day 1 - drift and mutation]]
-* [[Media:netlogo_day2_cooperation.pdf|Netlogo - day 2 - cooperation]]
-* [[Media:game_instructions.pdf|Instructions for online economic game]]
-==== NetLogo files ====
-* [[https://www.dropbox.com/s/tctj53o64p2u5k2/GenDriftBasic.nlogo Day 1 - drift and mutation]]
-* [[https://www.dropbox.com/s/mwyno2gpuhdcfxi/Altruism_basic.nlogo Day 2 - cooperation]]
-====Readings====
-In order to help you prioritize, the first reading for each day is the most important, while the second is important and the third is less important.
-Day 1:
-# [[Media:McShea.Brandon_2010_BiologysFirstLaw_Chapter1.pdf|McShea, Daniel W and Brandon, Robert N. 2010. ''Biology's first law: the tendency for diversity and complexity to increase in evolutionary systems''. University of Chicago Press, Chicago. Chapter 1.]]
-# [[Media:Zimmer_2013_SciAm.pdf|Zimmer, Carl. 2013. The Surprising Origins of Life's Complexity. ''Scientific American'' 309:84--89. doi:10.1038/scientificamerican0813-84]]
-# [[Media:Doolittle_2012_Nature.pdf|Doolittle, W. Ford. 2012. Evolutionary biology: A ratchet for protein complexity. ''Nature'' 481:270--271. doi:10.1038/nature10816]]
-Day 2:
-# [[Media:Szathmary.MaynardSmith_1995_Nature.pdf|Szathmáry, Eörs and Maynard Smith, John. 1995. The major evolutionary transitions. ''Nature'' 374:227--232. doi:10.1038/374227a0]]
-# [[Media:Godfrey-Smith_2006_BiolTheory.pdf|Godfrey-Smith, Peter. 2006. Local Interaction, Multilevel Selection, and Evolutionary Transitions. ''Biological Theory'' 1:372--380. doi:10.1162/biot.2006.1.4.372]]
-# [[Media:Okasha_2010_CurrBiol.pdf|Okasha, Samir. 2010. Levels of selection. ''Current Biology'' 20:R306-7. doi:10.1016/j.cub.2010.01.025]]
 ===Epidemiology===
-Global Epidemic and Mobility modeler:
-[http://www.gleamviz.org/]
-Readings:
-[http://www.pnas.org/content/103/7/2015.full.pdf+html Article on the role of airline network in predicting global epidemics.]
-[http://www.cpt.univ-mrs.fr/~barrat/bmb68.pdf Maps and cartograms of disease evolution in the US via air traffic.]
 ==Curriculum & Tools==
-[[Media:NetLogo_Mystery_Pattern.pdf | Netlogo Mystery Pattern]]‎
 [[Media:A1-Complex_Adaptive_Systems-W&T.doc | Walk & Turn (doc)‎]]
@@ Line 112: / Line 82: @@
 [[Media:C1-Swords&Shields.doc‎ | Swords & Shields (doc)]]
+[[Media:coreconcepts.pdf | Core Concepts (doc)]]
-[http://projectguts.org/files/Lorenz_0.nlogo Lorenz Attractor Netlogo Program ]
+[[Media:langstonsants.pdf | Langston's Ants (doc)]]
 ==Suggested Readings==
@@ Line 132: / Line 103: @@
 [http://www.youtube.com/watch?v=ZbK92bRW2lQ Hunting the Hidden Dimension, NOVA documentary on fractal geometry]
-[http://www.youtube.com/watch?v=cPjv5gIUeU8 The Secret Life of Chaos, BBC documentary on chaos theory]
 [http://www.pbs.org/wgbh/nova/nature/emergence.html Emergence, Abridged NOVA ScienceNOW documentary on emergent phenomena]
 [http://projectguts.org/files/Fileshare_Area493/videoTutorials/introCAS.mov Progect GUTS Intro to Complex Adaptive Systems]

2015 Complexity and Modeling Program Readings: Difference between revisions

From Santa Fe Institute Events Wiki

Latest revision as of 23:25, 15 July 2015

Contents

Readings and Materials

Complexity Resources

General Agent-Based Modeling

Probability Puzzles

Ecological Modeling

Rock, Paper, Scissors

Chaos Theory

Networks

Epidemiology

Curriculum & Tools

Suggested Readings

Suggested Videos