2003 Complex Systems Summer School Santa Fe-Readings

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2003 Complex Systems Summer School Santa Fe

Bradley, Elizabeth. "Numerical Solution of Differential Equations." Research Report on Curricula and Teaching CT003-98, Department of Computer Science, University of Colorado, Boulder, 1998.

Bradley, Elizabeth. "Time Series Analysis." in Intelligent Data Analysis: An Introduction, edited by M. Berthold and D.J. Hand, 167 - 194. Berlin; New York: Springer, 1999.

Shannon, C. E. "A Mathematical Theory of Communication." The Bell System Technical Journal. 27(July, October) 1948: 379-423, 623-656.

Carter, Thomas. "A Brief Survey of Linear Algebra." Notes, California State University, Stanislaus, 2001.

Crutchfield, James P. "What Lies Between Order and Chaos?" In Art and Complexity, edited by J. Casti and A. Karlqvist, 31 - 46. The Netherlands: Elsevier Science B.V., 2003.

Crutchfield, James P. "Is Anything Ever New? Considering Emergence." In Complexity: Metaphores, Models, and Reality, edited by G. Cowan, D. Pines, and D. Melzner, 515 - 537. Santa Fe Institute Studies in the Sciences of Complexity, Vol. XIX. Reading, MA: Addison-Wesley, 1994.

Shalizi, Cosma Rohilla and Crutchfield, James P. "Computational Mechanics: Pattern and Prediction, Structure and Simplicity." Working Paper 99-07-044, Santa Fe Institute, Santa Fe, NM, 1999.

Higgs, P.G. "RNA Secondary Structure: Physical and Computational Aspects." Quart. Rev. Biophys. 33(3) 2000: 199-253.

Eigen, M., McCaskill, J. and Schuster, P. "Molecular Quasispecies." J. Phys. Chem. 92 1988: 6881-6891.

Huynen, M.A., Stadler, P.F. and Fontana, W. "Smoothness within ruggedness - the role of neutrality in adaptation." Proc. Nat. Acad. Sci. 93 1996: 397-401.

Page, R.D.M and Holmes, E.C. "Molecular Evolution: a phylogenetic approach." 1998

Jow, H., Hudelot, C., Rattray, M. and Higgs, P.G. "Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution." Mol. Biol. Evol. 19 2002: 1591-1601.

McCabe, K. Neuroeconomics Lecture Notes. 2003

Forrest, S. and Mitchell, M. "Relative Building-Block Fitness and the Building-Block Hypothesis." In Foundations of Genetic Algorithms 2, edited by D. Whitley. San Mateo, CA: Morgan Kaufmann, 1993.

Mitchell, M. "Computation in Cellular Automata: A Selected Review." In Nonstandard Computation, edited by T. Gramss, S. Bornholdt, M. Gross, M. Mitchell, and T. Pellizzari, 95-140. Weinheim: VCH Verlagsgesellschaft, 1998.

Mitchell, M., Crutchfield, J. P., and Hraber, P. T. "Dynamics, Computation, and the 'Edge of Chaos': A Re-Examination." In Complexity: Metaphors, Models, and Reality, edited by G. Cowan, D. Pines, and D. Melzner. Reading, MA: Addison-Wesley, 1994.

Pagie, L. and Mitchell, M. "A Comparison of Evolutionary and Coevolutionary Search." International Journal of Computational Intelligence and Applications 2(1) (2002): 53-69.

van Nimwegen, E., Crutchfield, J. P., and Mitchell, M. "Finite Populations Induce Metastability in Evolutionary Search." Physics Letters A 229(2) (1997): 144-150.

Slides from the introductory lecture.

Jaynes, E. T. "Information Theory and Statistical Mechanics." In Statistical Physics, edited by K. Ford. New York, NY: Benjamin, 1963.

Sutton, Richard S. and Barto, Andrew G. Reinforcement Learning: An Introduction Cambridge, MA: MIT Press, 1998.

Young, H. Peyton. "The Economics of Convention." Journal of Economic Perspectives 10 (2) 1996: 105-122.

Young, H. Peyton. Individual Strategy and Social Structure: An Evolutionary Theory of Institutions. Princeton, NJ: Princeton University Press, 1998.