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CSSS 2008 Santa Fe-Tutorials

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Revision as of 03:34, 3 June 2008 by Giovanni (talk | contribs) (Open Source research software)
CSSS Santa Fe 2008


Open Source research software

Open (no pun intended...) your eyes to the wonderful world of FOSS -- Free and Open Source Software. While the distinction between Free and Open Source is a very interesting one (and highly contentious in the right crowds), for research purposes, we want to use the best tools for the job but some of us suffer from limited income, so I would like to talk about both. At the same time, FOSS is great to use for a non-economic reason: if you find bugs, or design extensions, you can fix them yourself (in OSS, at least) or at least report the problem back to a typically active community. Some potential tools to discuss/explore: R, Octave, Scilab, Gnuplot, perhaps some of the more useful languages in the field like Python and perhaps others I don't know as much about (a quick `apt-cache` on my Ubuntu Hardy install shows RasMol, ClustalW, SeaView, Achilles, complearn, EMBOSS, GENESIS, etc...)

R tutorial

I (Ruben) know a little bit about R (basic stuff such as common plots and regression analysis) but would like to enhance my R skills. Does anybody have an interest in a R tutorial, too? Please edit this if there is more interest.

Python tutorial

I've (also Ruben) interest in a Python tutorial. Please edit this if there is more interest.

I can give a tutorial on python and on scipy/numpy, its great scientific library Giovanni

Neutral models in biology

There is an interesting paper by Cosma Shalizi of SFI about methodological problems in social sciences research in which he talks about the concept of neutral models in evolution models. I was wondering if any of the bio-people can give a tutorial on this topic as I am pretty interested in understanding the concept. Giovanni