Foundations of Theoretical Medicine-Schedule

	Sunday, July 16
2:00 pm	Shuttle pick up from St. John's to SFI
3:00 pm	Welcome - Geoffrey West	Introduction - David Krakauer
4:30 pm	Break
5:00 pm	Medicine as a Complex Adaptive System - Tin Buchman
6:30 pm	Beer and wine, BBQ dinner at SFI
9:00 pm	Shuttle pick up from SFI to St. John's
	Monday, July 17
8:30 am	Shuttle pick-up from St. John's to SFI
9:30 am	Cardiology- Ary Goldberger, C.K. Peng, Madelena Costa
11:00 am	Break
11:15 am	Cardiology con't
12:30 pm	Lunch
1:30 pm	Lab- Time Series Analysis
4:30 pm	Shuttle pick-up from SFI to St. John's, FREE EVENING
7:00 pm	Shuttle pick-up from St. John's to Santa Fe Plaza
10:00 pm	Shuttle pick-up from Santa Fe Plaza to St. John's
	Tuesday, July 18
8:30 am	Shuttle pick-up from St. John's to SFI
9:30 am	Neuroscience- John Krakauer, Antony Bell
11:00 am	Break
11:15 am	Neuroscience cont'd
12:30 pm	Lunch
1:30 pm	Lab- Data Analysis
5:00 pm	Shuttle pick-up from SFI to Rancho de Chimayo
6:00 pm	Dinner at Rancho de Chimayo
9:00 pm	Shuttle pick-up from Rancho de Chimayo to St. John's college and Hotel Santa Fe
	Wednesday, July 19
9-10:15 am	Introduction to nonlinear dynamics III-Bradley
10:15 - 10:30	BREAK
10:30 - 11:45 am	RNA II-Stadler
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Dynamics of complex systems II-Alfred Hubler
3 - 4:15 pm	Biological networks I-Andreas Wagner
7:00 pm	Agent-based modeling- Owen Densmore and Stephen Guerin, with refreshments
	Thursday, June 8
9-10:15 am	Introduction to nonlinear dynamics IV-Bradley
10:15 - 10:30	BREAK
10:30 - 11:45 am	RNA III-Stadler
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Dynamics of complex systems III-Hubler
3 - 4:15 pm	Biological networks II- Wagner
4:30 - 5:15	Theories and models-Tom Carter
	Friday, June 9
	Power laws changed to Monday afternoon
9-10:15 am	Dynamics of complex systems IV-Hubler
10:15 - 10:30	BREAK
10:30 - 11:45 am	Coalescence- Jon Wilkins
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Student group session Markov Chain Monte Carlo tutorial-Lukas Kroc
3 - 5 pm	Student group session Population Genetics-Sussane
5:30 pm	Barbeque at the Santa Fe Institute

	Week Two (June 10-16) Emphasis on ecology
	Monday, June 12
9-10:15 am	Information theory I-Tom Carter
10:15 - 10:30	BREAK
10:30 - 11:45 am	Network structure and dynamics I-Mark Newman
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Student group session Noise-induced transitions-Andreea Munteanu
	Student group session Power laws-Ryan Woodard
3 - 4:15 pm	Student group session
7:00 pm	Tee-shirt design contest
	Tuesday, June 13
9-10:15 am	Information theory II-Carter
10:15 - 10:30	BREAK
10:30 - 11:45 am	Network structure and dynamics II-Newman
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Food webs I-Jennifer Dunne
3 - 4:15 pm	Climate Change I-Gidon Eshel
6:30 - 8:30 pm	Physics Lab-Hubler
	Wednesday, June 14
9-10:15 am	Food webs II-Dunne
10:15 - 10:30	BREAK
10:30 - 11:45 am	Network structure and dynamics III-Newman
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Climate Change II-Eshel
3:00 - 4:00 pm	Student group session Evolutionary Computation tutorial - Jorge Tavares
3:30 - 5:30 pm	Physics Lab-Hubler
5:30 - 8:00 pm	Pizza Party, Junior Commons Room and Balcony
	Thursday, June 15
9-10:15 am	Food webs III-Neo Martinez
10:15 - 10:30	BREAK
10:30 - 11:45 am	Phase transitions-Cris Moore
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Climate Change III-Eshel
3 - 5 pm	Student tutorials/problem sessions
3:30 - 5:30 pm	Physics Lab-Hubler
6:30 - 8:30 pm	Physics Lab-Hubler
	Friday, June 16
9-10:15 am	Food webs IV- Martinez
10:15 - 10:30	BREAK
10:30 - 11:45 am	Climate Change IV-Eshel
12- 1:30 pm	Lunch

	Week Three (June 17-23) Emphasis on social science and arts
	Monday, June 19
9-10:15 am	Genetic algorithms/simulation I-Melanie Mitchell
10:15 - 10:30	BREAK
10:30 - 11:45 am	Machine learning I-John Lafferty
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Free
3 - 4:15 pm	Why are epidemics so unpredictable?-Duncan Watts
4:30 - 5:30 pm	Tutorial - Fractional Dynamics - Michael Raghib
	Tuesday, June 20
9-10:15 am	Genetic algorithms/simulation II-Mitchell
10:15 - 10:30	BREAK
10:30 - 11:45 am	Machine learning II -Lafferty
12- 1:30 pm	Lunch / Open Lab -Hubler
1:30 - 2:45 pm	Social dynamics/communication II-Flack
3 - 4:15 pm	Process detection I: Modeling processes-George Cybenko
4:30 - 5:30 pm	Student tutorial: Iterated Function Systems and possible application to Complex Systems
7:00 - 8:00	Student tutorial: SQUID Sensors and what they may tell us about Protein Dynamics
Wednesday, June 21
9-10:15 am	Genetic algorithms/simulation III-Mitchell
10:15 - 10:30	BREAK
10:30 - 11:45 am	Machine learning III-Lafferty
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Stylometry-Dan Rockmore
3 - 4:15 pm	Process detection II: Algorithms for detecting multiple processes-Cybenko
4.30 - 5:15 pm	Student Tutorial - MindMapping and other IT Tools - Fabrice Cavarretta
7:00 pm	Movie night, Great Hall
	Thursday, June 22
9-10:15 am[	TBA- Larry Polansky
10:15 - 10:30	BREAK
10:30 - 11:45 am	Computational modeling in the social sciences I-John Miller
12- 12:30 pm	Group Photo
12:30 - 1:30 pm	Lunch
1:30 - 2:45 pm	Process detection III: Applications-Cybenko
3:00 - 4:00 pm	Student Tutorial: Linear Algebra - Elham Kashefi
4.00 - 5:00 pm	Student Tutorial: Automated negotiation and auction protocols for resource allocation - Valentin Robu
	Friday, June 23
9-10:15 am	TBA-Polansky
10:15 - 10:30	BREAK
10:30 - 11:45 am	Dimensional analysis, scaling, and zero intelligence modeling of financial markets: Eric Smith
12- 1:30 pm	Lunch
1:30 - 2:30 pm	Student Tutorial: Quantum Mechanics - Jack Waddell
3 - 4 pm	Student Tutorial: Quantum Computing - Elham Kashefi

	Week Four (June 24-30) Emphasis on neuroscience and quantum computing
	Monday, June 26
9-10:15 am	Neuroscience and complex systems I-Tony Bell
10:15 - 10:30	BREAK
10:30 - 11:45 am	Computational neuroscience I-Bruno Olshausen
12- 1:30 pm	Lunch
1:30 pm	Student project work
	Tuesday, June 27
9-10:15 am	Neurocience and complex systems II-Bell
10:15 - 10:30	BREAK
10:30 - 11:45 am	Quantum information I-Carlton Caves
12- 1:30 pm	Lunch
1:30 - 2:45 pm	Computational neuroscience II-Rob de Ruyter
3 - 4:15 pm	Computational neuroscience III-Bruno Olshausen
	Wednesday, June 28
9-10:15 am	Neuroscience and complex systems IV-Bell
10:15 - 10:30	BREAK
10:30 - 11:45 am	Quantum information II-Caves
12- 1:30 pm	Lunch
1:30 - 2:30 pm	Seminar: Dynamical Systems and Eigendecomposition - Heinz Koeppl
3 - 5 pm	Student project work
3 - 4 pm	Seminar: Quantum Computing with Measurements - Elham Kashefi
	Thursday, June 29
9-10:15 am	Computational neuroscience V-De Ruyter
10:15 - 10:30	BREAK
10:30 - 11:45 am	Quantum information III-Cris Moore
12- 1:30 pm	Lunch
1:30 pm	Free
	Friday, June 30
10 AM	shuttle pick up to get to SFI (or find your own way), followed by poster set-up and walk-around/discussion at SFI
12:00- 12:30 pm	Lunch (at SFI)
12:30 - 12:45
12:45 - 1:00	Heat Shock - Cool Shock Vincent Danos, Elham Kashefi, Heinz Koeppl, Carlos Messinea, Susanne Schindler
1:00 - 1:15	Delay-Coordinate Embedding of an Electroencephalogram Signal Alessandro Gagliardi
1:15 - 1:30	An Agent-based Model of Forest Use with Social Learning Akiko Satake
1:30 - 1:45	Investigating an Agent-based Model of Cooperative Coevolutionary Learning Brian Tivnan
1:45 - 2:00	RNAnet - A toy model for biological networks Andreea Munteanu & Andrea Tanzer
2:00 - 2:15	Negative Event Driven Ethnic Migration Mike Makowsky, Patrick Meier, Jorge Tavares, & Tamas Makany
2:15 - 2:30	Human Navigation Heuristics on the Traveling Salesman Problem (TSP) Tamas Makany & Mike Makowsky
2:30 - 2:45	Simulating Self-Organized Fractals Spandan Tiwari, Jos Elkink & Tetsuya Shoji
2:45 - 3:00	Emergence of Anomalous Transport in Self-Propelled Particle Models of Swarms with Locally Regulated Asynchronous Updating Michael Raghib
3:00 - 3:15	On the Topological Entropy of Multivalued Maps Maria Vivien Visaya
3:15 - 3:30	Optimization Algorithms Based on Small-World Phenomenon Haifeng Du and Jie Shao
3:30 - 3:45	Generation of social networks under agency in a resource exchange model Fabrice Cavarretta – Javier Muñoz Garcia - Valentin Robu – David Schaefer
3:45 - 4:00	Conflict, cooperation and casualties: the power law of war Patrick Meier, Elizabeth Leicht and Ryan Woodard
4 - 5 pm	Poster Session
6:00 pm	final banquet (Santa Fe Institute)