RBM Agenda: Difference between revisions
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8:40-9:10 William Hlavacek (LANL) '''An Overview of Rule-Based Modeling''' | 8:40-9:10 ''William Hlavacek (LANL)'' '''An Overview of Rule-Based Modeling''' | ||
===Software for Rule-Based Modeling=== | ===Software for Rule-Based Modeling=== | ||
9:10-9:40 James Faeder (LANL) '''BioNetGen''' | 9:10-9:40 ''James Faeder (LANL)'' '''BioNetGen''' | ||
9:40-10:10 Larry Lok (MSI) '''Moleculizer''' | 9:40-10:10 ''Larry Lok (MSI)'' '''Moleculizer''' | ||
10:10-10:40 '''Coffee Break Sponsored by SFI''' | 10:10-10:40 '''Coffee Break Sponsored by SFI''' | ||
10:40-11:10 Martin Meier-Schellersheim (NIH/NIAID) '''Simmune''' | 10:40-11:10 ''Martin Meier-Schellersheim'' (NIH/NIAID) '''Simmune''' | ||
11:10-11:40 | 11:10-11:40 ''Anika Öllrich (EBI)'' '''StochSim''' | ||
11:40-12:10 | 11:40-12:10 ''Aneil Mallavarapu'' '''Little b''' | ||
12:10-1:30 '''Catered Lunch Sponsored by SFI''' | 12:10-1:30 '''Catered Lunch Sponsored by SFI''' | ||
1:30-2:00 | 1:30-2:00 ''Pat Lincoln (SRI)'' '''Pathaway Logic ''' | ||
2:00-2:30 | 2:00-2:30 ''Ozan Kahramano'' '''Pi-calculus''' | ||
2:30-3:00 | 2:30-3:00 ''Pax Paxson (Matlab)'' '''Introduction to SimBiology and possible future enhancements for rule based modeling''' | ||
3:00-3:30 '''Coffee Break Sponsored by SFI''' | 3:00-3:30 '''Coffee Break Sponsored by SFI''' | ||
===Towards Standards for Rule-Based Models=== | |||
3:30-4:00 Michael Hucka (Caltech) '''An Overview of SBML''' | |||
4: | 4:00-4:30 ''Nathan Addy (MSI)'' '''Experiences Converting Between BNG and Moleculizer Input Formats''' | ||
5:00-5:30 | 4:30-5:00 ''Emek Demir (MSKCC)'' '''Rule based aspects in BioPAX''' | ||
5:00-5:30 ''Michael Blinov (UCHC)'' '''TBA''' | |||
5:30-5:45 '''Day 1 Summary and Thoughts About Day 2''' (Hucka) | 5:30-5:45 '''Day 1 Summary and Thoughts About Day 2''' (Hucka) | ||
Revision as of 03:54, 4 June 2007
Thursday, June 14
8:30-8:40 Opening Remarks
8:40-9:10 William Hlavacek (LANL) An Overview of Rule-Based Modeling
Software for Rule-Based Modeling
9:10-9:40 James Faeder (LANL) BioNetGen
9:40-10:10 Larry Lok (MSI) Moleculizer
10:10-10:40 Coffee Break Sponsored by SFI
10:40-11:10 Martin Meier-Schellersheim (NIH/NIAID) Simmune
11:10-11:40 Anika Öllrich (EBI) StochSim
11:40-12:10 Aneil Mallavarapu Little b
12:10-1:30 Catered Lunch Sponsored by SFI
1:30-2:00 Pat Lincoln (SRI) Pathaway Logic
2:00-2:30 Ozan Kahramano Pi-calculus
2:30-3:00 Pax Paxson (Matlab) Introduction to SimBiology and possible future enhancements for rule based modeling
3:00-3:30 Coffee Break Sponsored by SFI
Towards Standards for Rule-Based Models
3:30-4:00 Michael Hucka (Caltech) An Overview of SBML
4:00-4:30 Nathan Addy (MSI) Experiences Converting Between BNG and Moleculizer Input Formats
4:30-5:00 Emek Demir (MSKCC) Rule based aspects in BioPAX
5:00-5:30 Michael Blinov (UCHC) TBA
5:30-5:45 Day 1 Summary and Thoughts About Day 2 (Hucka)
6:30 Dinner at Ristra Sponsored by SFI
Friday, June 15
8:30-9:00 Talk 12
9:00-9:30 Talk 13
9:30-10:00 Talk 14
10:00-10:30 Coffee Break Sponsored by SFI
10:30-11:00 Talk 15
11:00-11:30 Talk 16
11:30-12:00 Talk 17
12:00-1:30 Lunch Sponsored by SFI
1:30-2:00 Talk 18
2:00-2:30 Talk 19
2:30-3:30 Presentation of SBML Level 3 Proposal (Blinov) Followed by Discussion
3:30-4:00 Coffee Break Sponsored by SFI
4:00-? Open Discussion about Level 3 and Other Topics in Rule-Based Modeling. Preparation of a conference report to be submitted to Molecular Systems Biology. Future meetings?
Saturday, June 16
Morning Departure