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{{2013 Complexity and Modeling Program}}
{{2013 Complexity and Modeling Program}}


==Readings and Materials==
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===General Agent-Based Modeling===
{| border="1" cellpadding="2"
! scope="col"width="100" align="center | Time
! scope="col"width="700" align="center | Activity


[[Media:Axtell,_et_al_-_Aligning_Simulation_Models.pdf | Aligning Simulation Models - Axtell et al.]]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Sunday, July 28</b>
|-
  |
  |<b>All events at Groton School</b>
|-
  |width="15%" | 12:00 p.m. - 4:00 p.m.
  |All students flying much arrive to Logan International Airport between 12:00p.m.-4:00p.m.  
|-
  |6:00 p.m.
  |Welcome Dinner at Groton School
|-
  |7:30 p.m.
  |Discussion of goals and rules
|-


[[Media:Epstein_-_Agent-based_Generative_Social_Science.pdf | Agent-Based Generative Social Science - Epstein‎]]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Monday, July 29</b>


[[Media:Epstein,_Steinbruner,_Parker_-_Modeling_Civil_Violence.pdf | Modeling Civil Violence - Epstein‎]]
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |width="15%" |9:00 a.m. - 9:30 a.m.
  |Introduction to Complex Systems - Nick Bennett
|-
  |width="15%" |9:30 a.m. - 10:00 a.m.
  |Quantitative Ecology - David Black
|-
  |width="15%" |10:00 a.m. - 10:45 a.m.
  |NetLogo Modeling - JP Gonzales, Outdoor Complexity Games
|-
  |width="15%" |11:00 a.m. - 11:45 a.m.
  |Langton's Ants Model - Nick Bennett
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 1:45 p.m.
  |SFI History and Education Programs - Juniper Lovato
|-
  |1:45 p.m. - 2:30 p.m.
  |Algorithms in NetLogo, Evolutionary Adaptation
|-
  |2:30 p.m. - 3:30 p.m.
  |Debunking peppered Moth
|-
  |4:00 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Evening Session - NetLogo Activities
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[[Media:Gajardo,_Moreira,_Goles_-_Complexity_of_Langton's_Ant.pdf | Complexity of Langton's Ant - Gajardo, Moreira, and Goles]]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Tuesday, July 30</b>


===Tasmanian Devils===
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |9:00 a.m. - 10:00 a.m.
  |Chaos Game
|-
  |width="15%" |10:00 a.m. - 11:45 a.m.
  |Field Session 1 - Pollinators and Predators in an Old Field - Laboratory Session 1 Identifying the specimens and creating the database, Presentation: Using Data to Develop a Model
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 2:00 p.m.
  |Lab Work
|-
  |2:00 p.m. - 3:45 p.m.
  |Prisoner's Dilemma & RPS: Game Theory
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 9:00 p.m.
  |Evening Session - Game Theory: Wargames
|-
  |9:00 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[[Media:Polygons.PNG |Polygons.PNG]]


===Rock, Paper, Scissors===
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Wednesday, July 31 (Laundry Day)</b>


[[Media:Kerr,_et_al_-_Local_dispersal_promotes_biodiversity_in_rock-paper-scissors.pdf | Rock Paper Scissors in Bacteria & Biodiversity - Kerr et al.]]‎
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-  
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Topics in Complexity: Epidemiology,,Networks & Food Webs, Chaos. Swords and Shields outdoor activity, Field Session 2 Collecting the flowers - applies floral structure analysis
|-  
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Lorenz Water Wheel
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Evening Session - Introduction to Projects
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[[Media:Szabo,_Szolnoki,_Izsak_-_RPS_on_Small_World_Networks.pdf | RPS on a Small World Network - Szabo, Szolnoki, Izsak]]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Thursday, August 1</b>


[[Media:Kircher_-_Emergent_Behavior_of_Rock-Paper-Scissors_Game.pdf‎ | Emergent Behavior of Rock Paper Scissors - Kircher]]
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-  
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Jeremy Van Cleve: What is biological complexity? :: Darwin and evolution :: Intro to population genetics :: Paper discussion
|-  
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Modeling Evolution with NetLogo: genetic drift and mutation
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Evening Session - Work on Hill Climb Challenge
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


===Flocking===
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Friday, August 2 (Laundry Day) </b>


[[Media:Feder_-_Statistical_Physics_is_for_the_Birds.pdf | Statistical Physics is for the Birds - Feder ]]
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Jeremy Van Cleve: Theory of cooperation in biology (and economics) :: Experimental economics game :: Paper discussion
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Modeling Evolution with NetLogo: evolution of cooperation
|-  
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Evening Session - Work on Hill Climb Challenge
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[[Media:Hartman,_Benes_-_Autonomous_Boids.pdf | Autonomous Boids - Hartman & Benes]]‎


[[Media:Reynolds_-_Flocks,_Herds,_and_Schools.PDF | Flocks, Herds, and Schools - Reynolds]]‎
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Saturday, August 3</b>


===Chaos Theory===
|-
  |All Day
  |Sleep in and a relaxed brunch at 10 a.m. then Fun day at Groton School or hiking
|-
 
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Sunday, August 4</b>


[[Media:Lorenz_-_Deterministic,_Non-periodic_Flow.PDF | Deterministic Nonperiodic Flow - Lorenz]]‎
|-
  |Morning: Sleep in and a relaxed brunch
  |Afternoon: Time to work on Hill Climb Challenge
|-  
  |5:00p.m.
  |Hill Climb Challenge
|-  
|Evening
  |Participants prepare project materials for presentation
|-  


===Networks===


[[Media:Dunne_-_Encyclopedia_of_Complex_Systems,_Food_Webs.pdf | Food Webs - Dunne]]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Monday, August 5</b>


===Ants===
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Amy Wesolowski Presentation - Modeling the spread of disease
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Amy Wesolowski Workshop
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Field Session 3- Evening - Pollinators of the Night
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[[Media:Dorigo,_Maniezzo,_Colorni_-_The_Ant_System_-_Optimization_by_a_colony_of_cooperating_agents.pdf‎ | The Ant System: Optimization by a Colony of Cooperating Agents - Dorigo, Maniezzo, Colorni ]]


===Epidemiology===
|- bgcolor="#aaaaaa" align="center"
Global Epidemic and Mobility modeler:
  | <br/>
[http://www.gleamviz.org/]
  | <b>Tuesday, August 6</b>


Readings:
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Morning: population size determination: capture/recapture of painted turtles, Work on Projects
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Collaborative Work on Projects - troubleshooting and problem solving
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Work on Projects
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[http://www.pnas.org/content/103/7/2015.full.pdf+html Article on the role of airline network in predicting global epidemics.]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Wednesday, August 7 (Laundry Day) </b>


[http://www.cpt.univ-mrs.fr/~barrat/bmb68.pdf Maps and cartograms of disease evolution in the US via air traffic.]
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Check pitfalls - patterns of vertebrate distribution, Work on Projects
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Work on Projects
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Work on Projects
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


==Curriculum & Tools==
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Thursday, August 8</b>


[[Media:NetLogo_Mystery_Pattern.pdf | Netlogo Mystery Pattern]]‎
|-
  |8:00 a.m. - 8:45 a.m.
  |Breakfast
|-
  |width="15%" |9:00 a.m. - 12:00 p.m.
  |Final Project Presentations
|-
  |12:00 p.m. - 1:00 p.m.
  |Lunch
|-
  |1:00 p.m. - 4:00 p.m.
  |Final Project Presentations
|-
  |4:30 p.m. - 5:30 p.m.
  |Swimming or field games
|-
  |5:45 p.m. - 6:30 p.m.
  |Dinner
|-
  |7:15 p.m. - 8:15 p.m.
  |Games, work time, or movies
|-
  |8:15 - 10:30 p.m.
  |Games, work time, or movies
|-
  |10:30 p.m.
  |Lights out
|-


[[Media:A1-Complex_Adaptive_Systems-W&T.doc | Walk & Turn (doc)‎]]


[[Media:C1-Swords&Shields.doc‎ | Swords & Shields (doc)]]
|- bgcolor="#aaaaaa" align="center"
  | <br/>
  | <b>Friday, August 9</b>


<b>Hillclimbers PDF AND MODEL</b> (.PDF with .nlogo attachent)<br>
|-
[[Media:Hill_Climbing_Rules.pdf | PDF File Download ‎]]
  |8:00 a.m. - 8:30 a.m.
 
  |Breakfast
[http://projectguts.org/files/Basic%20Hill%20Climbing%20Rig.nlogo  Hillclimbers Tournament Rig]<br>
|-  
[http://projectguts.org/files/example-turtles.nls  Hillclimbers Example Turtles]
  |width="15%" |8:30 a.m.
 
  |Shuttle leaves to Logan International Airport
==Suggested Readings==
|-  
 
  |10:00 a.m.
[[Media:Why_Model.pdf‎ |Why Model? - Joshua M Epstein, ]]
  |Shuttle arrives to Logan International Airport
|-
[http://www.santafe.edu/media/workingpapers/10-12-033.pdf Jim Crutchfield, The Dreams of Theory]
 
[http://www.amazon.com/Complexity-Guided-Tour-Melanie-Mitchell/dp/0195124413/ref=sr_1_1?ie=UTF8&qid=1309386862&sr=8-1 Melanie Mitchell, Complexity: A Guided Tour]
 
[http://www.amazon.com/Honeybee-Democracy-Thomas-D-Seeley/dp/0691147213  Thomas D. Seeley, Honey Bee Democracy]
 
'''Suggested Videos'''
 
[http://santafe.edu/research/videos/catalog/ Video Catalog of SFI Lectures]
 
[http://itunes.apple.com/itunes-u/understanding-human-behavior/id381962164 Iain Couzin, Understanding Human Behavior]
 
[http://www.youtube.com/watch?v=ZbK92bRW2lQ Hunting the Hidden Dimension, NOVA documentary on fractal geometry]
 
[http://www.youtube.com/watch?v=cPjv5gIUeU8 The Secret Life of Chaos, BBC documentary on chaos theory]
 
[http://www.pbs.org/wgbh/nova/nature/emergence.html Emergence, Abridged NOVA ScienceNOW documentary on emergent phenomena]
 
[http://projectguts.org/files/Fileshare_Area493/videoTutorials/introCAS.mov Progect GUTS Intro to Complex Adaptive Systems]

Latest revision as of 13:01, 1 August 2013

2013 Complexity and Modeling Program Navigation



Time Activity

Sunday, July 28
All events at Groton School
12:00 p.m. - 4:00 p.m. All students flying much arrive to Logan International Airport between 12:00p.m.-4:00p.m.
6:00 p.m. Welcome Dinner at Groton School
7:30 p.m. Discussion of goals and rules

Monday, July 29
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 9:30 a.m. Introduction to Complex Systems - Nick Bennett
9:30 a.m. - 10:00 a.m. Quantitative Ecology - David Black
10:00 a.m. - 10:45 a.m. NetLogo Modeling - JP Gonzales, Outdoor Complexity Games
11:00 a.m. - 11:45 a.m. Langton's Ants Model - Nick Bennett
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 1:45 p.m. SFI History and Education Programs - Juniper Lovato
1:45 p.m. - 2:30 p.m. Algorithms in NetLogo, Evolutionary Adaptation
2:30 p.m. - 3:30 p.m. Debunking peppered Moth
4:00 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Evening Session - NetLogo Activities
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Tuesday, July 30
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 10:00 a.m. Chaos Game
10:00 a.m. - 11:45 a.m. Field Session 1 - Pollinators and Predators in an Old Field - Laboratory Session 1 Identifying the specimens and creating the database, Presentation: Using Data to Develop a Model
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 2:00 p.m. Lab Work
2:00 p.m. - 3:45 p.m. Prisoner's Dilemma & RPS: Game Theory
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 9:00 p.m. Evening Session - Game Theory: Wargames
9:00 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Wednesday, July 31 (Laundry Day)
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Topics in Complexity: Epidemiology,,Networks & Food Webs, Chaos. Swords and Shields outdoor activity, Field Session 2 Collecting the flowers - applies floral structure analysis
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Lorenz Water Wheel
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Evening Session - Introduction to Projects
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Thursday, August 1
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Jeremy Van Cleve: What is biological complexity? :: Darwin and evolution :: Intro to population genetics :: Paper discussion
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Modeling Evolution with NetLogo: genetic drift and mutation
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Evening Session - Work on Hill Climb Challenge
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Friday, August 2 (Laundry Day)
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Jeremy Van Cleve: Theory of cooperation in biology (and economics) :: Experimental economics game :: Paper discussion
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Modeling Evolution with NetLogo: evolution of cooperation
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Evening Session - Work on Hill Climb Challenge
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Saturday, August 3
All Day Sleep in and a relaxed brunch at 10 a.m. then Fun day at Groton School or hiking

Sunday, August 4
Morning: Sleep in and a relaxed brunch Afternoon: Time to work on Hill Climb Challenge
5:00p.m. Hill Climb Challenge
Evening Participants prepare project materials for presentation

Monday, August 5
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Amy Wesolowski Presentation - Modeling the spread of disease
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Amy Wesolowski Workshop
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Field Session 3- Evening - Pollinators of the Night
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Tuesday, August 6
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Morning: population size determination: capture/recapture of painted turtles, Work on Projects
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Collaborative Work on Projects - troubleshooting and problem solving
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Work on Projects
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Wednesday, August 7 (Laundry Day)
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Check pitfalls - patterns of vertebrate distribution, Work on Projects
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Work on Projects
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Work on Projects
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Thursday, August 8
8:00 a.m. - 8:45 a.m. Breakfast
9:00 a.m. - 12:00 p.m. Final Project Presentations
12:00 p.m. - 1:00 p.m. Lunch
1:00 p.m. - 4:00 p.m. Final Project Presentations
4:30 p.m. - 5:30 p.m. Swimming or field games
5:45 p.m. - 6:30 p.m. Dinner
7:15 p.m. - 8:15 p.m. Games, work time, or movies
8:15 - 10:30 p.m. Games, work time, or movies
10:30 p.m. Lights out

Friday, August 9
8:00 a.m. - 8:30 a.m. Breakfast
8:30 a.m. Shuttle leaves to Logan International Airport
10:00 a.m. Shuttle arrives to Logan International Airport
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