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{{The Foundations of Theoretical Medicine, SFI}}
{{Foundations of Theoretical Medicine}}
{| border="1" cellpadding="2" width="430"
{| border="1" cellpadding="2" width="430"
|+
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|-
|-
! !! Sunday, July 16
!nowrap="nowrap"| !!nowrap="nowrap"|Sunday, July 16
|-
|-
!valign="top" | 2:00 pm
!valign="top" nowrap="nowrap"| 2:00 pm
| Shuttle pick up from St. John's to SFI
| Shuttle pick up from St. John's to SFI
|-
|-
!valign="top" | 3:00 pm  
!valign="top" nowrap="nowrap"| 3:00 pm  
| Welcome - Geoffrey West
| Welcome - Geoffrey West  
| Introduction - David Krakauer
Introduction - David Krakauer
|-
|-
!valign="top" | 4:30 pm  
!valign="top" nowrap="nowrap"| 4:30 pm  
| Break
| Break
|-
|-
!valign="top" | 5:00 pm  
!valign="top" nowrap="nowrap"| 5:00 pm  
| Medicine as a Complex Adaptive System - Tin Buchman
| Medicine as a Complex Adaptive System - Tin Buchman
|-
|-
!valign="top" | 6:30 pm  
!valign="top" nowrap="nowrap"| 6:30 pm  
| Beer and wine, BBQ dinner at SFI
| Beer and wine, BBQ dinner at SFI
|-
|-
!valign="top" | 9:00 pm  
!valign="top" nowrap="nowrap"| 9:00 pm  
| Shuttle pick up from SFI to St. John's
| Shuttle pick up from SFI to St. John's
|-
|-
!  
!nowrap="nowrap"|
| '''Monday, July 17'''
| '''Monday, July 17'''
|-
|-
! 8:30 am
!nowrap="nowrap"|8:30 am
| Shuttle pick-up from St. John's to SFI  
| Shuttle pick-up from St. John's to SFI  
|-
|-
! 9:30 am
!nowrap="nowrap"|9:30 am
| Cardiology- Ary Goldberger, C.K. Peng, Madelena Costa
| Cardiology- Ary Goldberger, C.K. Peng, Madelena Costa
|-
|-
! 11:00 am  
!nowrap="nowrap"|11:00 am  
| Break
| Break
|-
|-
! 11:15 am  
!nowrap="nowrap"|11:15 am  
| Cardiology con't
| Cardiology con't
|-
|-
! 12:30 pm
!nowrap="nowrap"|12:30 pm
| Lunch
| Lunch
|-
|-
! 1:30 pm  
!nowrap="nowrap"|1:30 pm  
| Lab- Time Series Analysis
| Lab- Time Series Analysis
|-
|-
! 4:30 pm  
!nowrap="nowrap"|4:30 pm  
| Shuttle pick-up from SFI to St. John's, FREE EVENING
| Shuttle pick-up from SFI to St. John's, FREE EVENING
|-
|-
! 7:00 pm  
!nowrap="nowrap"|7:00 pm  
| Shuttle pick-up from St. John's to Santa Fe Plaza
| Shuttle pick-up from St. John's to Santa Fe Plaza
|-
|-
! 10:00 pm  
!nowrap="nowrap"|10:00 pm  
| Shuttle pick-up from Santa Fe Plaza to St. John's
| Shuttle pick-up from Santa Fe Plaza to St. John's
|-
|-
!  
!nowrap="nowrap"|
| '''Tuesday, July 18'''
| '''Tuesday, July 18'''
|-
|-
! 8:30 am
!nowrap="nowrap"|8:30 am
| Shuttle pick-up from St. John's to SFI  
| Shuttle pick-up from St. John's to SFI  
|-
|-
! 9:30 am
!nowrap="nowrap"|9:30 am
| Neuroscience- John Krakauer, Antony Bell
| Neuroscience- John Krakauer, Antony Bell
|-
|-
! 11:00 am  
!nowrap="nowrap"|11:00 am  
| Break
| Break
|-
|-
! 11:15 am  
!nowrap="nowrap"|11:15 am  
| Neuroscience cont'd
| Neuroscience cont'd
|-
|-
! 12:30 pm  
!nowrap="nowrap"|12:30 pm  
| Lunch
| Lunch
|-
|-
! 1:30 pm  
!nowrap="nowrap"|1:30 pm
|Dr. Richard North : Neural Network Applications to Stimulating the Human Nervous System
|-
!nowrap="nowrap"|3:00 pm  
| Lab- Data Analysis
| Lab- Data Analysis
|-
|-
! 5:00 pm  
!nowrap="nowrap"|5:00 pm  
| Shuttle pick-up from SFI to Rancho de Chimayo
| Shuttle pick-up from SFI to Rancho de Chimayo
|-
|-
! 6:00 pm  
!nowrap="nowrap"|6:00 pm  
| Dinner at Rancho de Chimayo
| Dinner at Rancho de Chimayo
|-
|-
! 9:00 pm  
!nowrap="nowrap"|9:00 pm  
| Shuttle pick-up from Rancho de Chimayo to St. John's college and Hotel Santa Fe
| Shuttle pick-up from Rancho de Chimayo to St. John's college and Hotel Santa Fe
|-
|-
!  
!nowrap="nowrap"|
| '''Wednesday, July 19'''
| '''Wednesday, July 19'''
|-
|-
! 9-10:15 am
!nowrap="nowrap"|8:30 am
| Introduction to nonlinear dynamics III-Bradley
| Shuttle pick-up from St. John's to SFI
|-
|-
! 10:15 - 10:30  
!nowrap="nowrap"|9:30 am
| BREAK
| Immunology- Rob de Boer, Phil Hodgkin
|-
|-
! 10:30 - 11:45 am  
!nowrap="nowrap"|11:00 am  
| RNA II-Stadler
| Break
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 - 2:45 pm
| Dynamics of complex systems II-Alfred Hubler
|-
|-
! 3 - 4:15 pm
!nowrap="nowrap"|11:15 am
| Biological networks I-Andreas Wagner
| Immunology cont'd
|-
|-
! 7:00 pm
!nowrap="nowrap"|12:30 pm  
| Agent-based modeling- Owen Densmore and Stephen Guerin, with refreshments
|-
!
| '''Thursday, June 8'''
|-
! 9-10:15 am
| Introduction to nonlinear dynamics IV-Bradley
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| RNA III-Stadler
|-
! 12- 1:30 pm  
| Lunch
| Lunch
|-
|-
! 1:30 - 2:45 pm  
!nowrap="nowrap"|1:30 pm  
| Dynamics of complex systems III-Hubler
| Lab- Theoretical Immunology
|-
|-
! 3 - 4:15 pm  
!nowrap="nowrap"|5:30 pm  
| Biological networks II- Wagner
| Cancer- Thomas Diesboeck
|-
|-
! 4:30 - 5:15
!nowrap="nowrap"|7:00 pm
| <font color=green>Theories and models-Tom Carter</font>
| Pizza dinner at SFI
|-
|-
!  
!nowrap="nowrap"|8:30 pm
| '''Friday, June 9'''
| Shuttle pick-up from SFI to St. John's
|-
|-
!  
!nowrap="nowrap"|
| <font color=green>Power laws changed to Monday afternoon</font>
| '''Thursday, July 20'''
|-
|-
! 9-10:15 am
!nowrap="nowrap"|8:00 am
| Dynamics of complex systems IV-Hubler
| Shuttle pick-up from St. John's to SFI
|-
|-
! 10:15 - 10:30
!nowrap="nowrap"|9:00 am
| BREAK
| Lab- Cancer
|-
|-
! 10:30 - 11:45 am  
!nowrap="nowrap"|11:00 am  
| Coalescence- Jon Wilkins
| Break
|-
|-
! 12- 1:30 pm
!nowrap="nowrap"|11:15 am
| Lunch
| Lab- Cancer cont'd
|-
|-
! 1:30 - 2:45 pm  
!nowrap="nowrap"|12:30 pm  
| Student group session
| Lunch
<font color=green>Markov Chain Monte Carlo tutorial-Lukas Kroc</font>
|-
|-
! 3 - 5 pm  
!nowrap="nowrap"|1:30 pm  
| Student group session
| Shuttle pick-up from SFI to St. John's with a drop at the Plaza and Museum Hill, FREE AFTERNOON AND EVENING
<font color=green>Population Genetics-Sussane</font>
|-
|-
! 5:30 pm
!nowrap="nowrap"|
| Barbeque at the Santa Fe Institute
| '''Friday, July 21'''
|-
|-
|}
!nowrap="nowrap"|8:30 am
 
| Shuttle pick-up from St. John's to SFI
 
{| border="1" cellpadding="2" width="450"
|+
|-
|-
! !! Week Two (June 10-16) Emphasis on ecology         
!nowrap="nowrap"|9:30 am
| Chronobiology- Till Roenneberg, Martha Merrow
|-
|-
!  
!nowrap="nowrap"|11:00 am  
| '''Monday, June 12'''
| Break
|-
! 9-10:15 am
| Information theory I-Tom Carter
|-
|-
! 10:15 - 10:30
!nowrap="nowrap"|11:15 am
| BREAK
| Chronobiology cont'd
|-
|-
! 10:30 - 11:45 am
!nowrap="nowrap"|12:30 pm  
| Network structure and dynamics I-Mark Newman
|-
! 12- 1:30 pm  
| Lunch
| Lunch
|-
|-
! 1:30 - 2:45 pm  
!nowrap="nowrap"|1:30 pm  
| Student group session
| Lab- Biological Oscillators and Aging
<font color=green>Noise-induced transitions-Andreea Munteanu</font>
|-
|-
!  
!nowrap="nowrap"|4:30 pm
| Student group session
| Shuttle pick-up from SFI to St. John's
<font color=green>Power laws-Ryan Woodard</font>
|-
|-
! 3 - 4:15 pm  
!nowrap="nowrap"|5:15 pm  
| Student group session
| Shuttle pick-up from St. John's to Plaza, students and faculty to make their own way to dinner at El Farol on Canyon Road
|-
|-
! 7:00 pm
!nowrap="nowrap"|7:00 pm  
| Tee-shirt design contest
| Dinner at El Farol, Canyon Road
|-
|-
!  
!nowrap="nowrap"|10:00 pm
| '''Tuesday, June 13'''
| Shuttle pick-up from El Farol to St. John's
|-
|-
! 9-10:15 am
!nowrap="nowrap"|
| Information theory II-Carter
| '''Saturday, July 22'''
|-
|-
! 10:15 - 10:30  
!nowrap="nowrap"|8:30 am
| BREAK
| Shuttle pick-up from St. John's to SFI
|-
|-
! 10:30 - 11:45 am  
!nowrap="nowrap"|9:30 am
| Network structure and dynamics II-Newman
| The Promise of Systems Biology- Walter Fontana
|-
|-
! 12- 1:30 pm
!nowrap="nowrap"|11:00 am  
| Lunch
| Break
|-
! 1:30 - 2:45 pm
| Food webs I-Jennifer Dunne
|-
! 3 - 4:15 pm
| Climate Change I-Gidon Eshel
|-
! 6:30 - 8:30 pm
| Physics Lab-Hubler
|-
!
| '''Wednesday, June 14'''
|-
! 9-10:15 am
| Food webs II-Dunne
|-
! 10:15 - 10:30
| BREAK
|-
|-
! 10:30 - 11:45 am  
!nowrap="nowrap"|11:15 am  
| Network structure and dynamics III-Newman
| The New Physics of Medicine - Geoffrey West
|-
|-
! 12- 1:30 pm  
!nowrap="nowrap"|1:00 pm  
| Lunch
| Lunch
|-
|-
! 1:30 - 2:45 pm  
!nowrap="nowrap"|2:30 pm  
| Climate Change II-Eshel
| Student Presentations
|-
|-
! 3:00 - 4:00 pm
!nowrap="nowrap"|5:00 pm  
| Student group session
| Break
<font color=green>Evolutionary Computation tutorial - Jorge Tavares</font>
|-
! 3:30 - 5:30 pm
| Physics Lab-Hubler
|-
! 5:30 - 8:00 pm
| Pizza Party, Junior Commons Room and Balcony
|-
!
| '''Thursday, June 15'''
|-
! 9-10:15 am
| Food webs III-Neo Martinez
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Phase transitions-Cris Moore
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 - 2:45 pm
| Climate Change III-Eshel
|-
! 3 - 5 pm
| Student tutorials/problem sessions
|-
! 3:30 - 5:30 pm
| Physics Lab-Hubler
|-
! 6:30 - 8:30 pm
| Physics Lab-Hubler
|-
!
| '''Friday, June 16'''
|-
! 9-10:15 am
| Food webs IV- Martinez
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Climate Change IV-Eshel
|-
! 12- 1:30 pm
| Lunch
|-
|}
 
 
{| border="1" cellpadding="2" width="450"
|+
|-
!  !! Week Three (June 17-23) Emphasis on social science and arts
|-
!
| '''Monday, June 19'''
|-
! 9-10:15 am
| Genetic algorithms/simulation I-Melanie Mitchell
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Machine learning I-John Lafferty
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 - 2:45 pm
|Free
|-
! 3 - 4:15 pm
| Why are epidemics so unpredictable?-Duncan Watts
|-
! 4:30 - 5:30 pm
| <font color=green>Tutorial - Fractional Dynamics - Michael Raghib</font>
|-
!
| '''Tuesday, June 20'''
|-
! 9-10:15 am
| Genetic algorithms/simulation II-Mitchell
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Machine learning II -Lafferty
|-
! 12- 1:30 pm
| Lunch / Open Lab -Hubler
|-
! 1:30 - 2:45 pm
| Social dynamics/communication II-Flack
|-
! 3 - 4:15 pm
| Process detection I:  Modeling processes-George Cybenko
|-
! 4:30 - 5:30 pm
| <font color=green>Student tutorial: Iterated Function Systems and possible application to Complex Systems<font>
|-
! 7:00 - 8:00
| <font color=green>Student tutorial: SQUID Sensors and what they may tell us about Protein Dynamics<font>
|-
| '''Wednesday, June 21'''
|-
! 9-10:15 am
| Genetic algorithms/simulation III-Mitchell
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Machine learning III-Lafferty
|-
! 12- 1:30 pm  
| Lunch
|-
! 1:30 - 2:45 pm
| Stylometry-Dan Rockmore
|-
! 3 - 4:15 pm
| Process detection II:  Algorithms for detecting multiple processes-Cybenko
|-
! 4.30 - 5:15 pm
| <font color=green>Student Tutorial - MindMapping and other IT Tools - Fabrice Cavarretta</font>
|-
! 7:00 pm
| Movie night, Great Hall
|-
!
| '''Thursday, June 22'''
|-
! 9-10:15 am[
| TBA- Larry Polansky
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Computational modeling in the social sciences I-John Miller
|-
! 12- 12:30 pm
| Group Photo
|-
! 12:30 - 1:30 pm
| Lunch
|-
! 1:30 - 2:45 pm
| Process detection III:  Applications-Cybenko
|-
! 3:00 - 4:00 pm
| <font color=green>Student Tutorial: Linear Algebra - Elham Kashefi</font>
|-
! 4.00 - 5:00 pm
| <font color=green>[[Student Tutorial: Automated negotiation and auction protocols for resource allocation - Valentin Robu]]</font>
|-
!
| '''Friday, June 23'''
|-
! 9-10:15 am
| TBA-Polansky
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Dimensional analysis, scaling, and zero intelligence modeling of financial markets: Eric Smith
|-
! 12- 1:30 pm
| Lunch
|-
| 1:30 - 2:30 pm
|<font color=green>Student Tutorial: Quantum Mechanics - Jack Waddell </font>
|-
| 3 - 4 pm
|<font color=green>Student Tutorial: Quantum Computing - Elham Kashefi </font>
|}
 
 
{| border="1" cellpadding="2" width="450"
|+
|-
! !! Week Four (June 24-30) Emphasis on neuroscience and quantum computing
|-
!
| '''Monday, June 26'''
|-
! 9-10:15 am
| Neuroscience and complex systems I-Tony Bell
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Computational neuroscience I-Bruno Olshausen
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 pm
| Student project work
|-
!
| '''Tuesday, June 27'''
|-
! 9-10:15 am
| Neurocience and complex systems II-Bell
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Quantum information I-Carlton Caves
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 - 2:45 pm
| Computational neuroscience II-Rob de Ruyter
|-
! 3 - 4:15 pm
| Computational neuroscience III-Bruno Olshausen
 
|-
!
| '''Wednesday, June 28'''
|-
! 9-10:15 am
| Neuroscience and complex systems IV-Bell
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Quantum information II-Caves
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 - 2:30 pm
| <font color=green>Seminar: Dynamical Systems and Eigendecomposition - Heinz Koeppl</font>
|-
! 3 - 5 pm
| Student project work
|-
! 3 - 4 pm
| <font color=green>Seminar: Quantum Computing with Measurements - Elham Kashefi</font>
|-
!
| '''Thursday, June 29'''
|-
! 9-10:15 am
| Computational neuroscience V-De Ruyter
|-
! 10:15 - 10:30
| BREAK
|-
! 10:30 - 11:45 am
| Quantum information III-Cris Moore
|-
! 12- 1:30 pm
| Lunch
|-
! 1:30 pm
| Free
|-
!
| '''Friday, June 30'''
|-
!10 AM
|shuttle pick up to get to SFI (or find your own way), followed by poster set-up and walk-around/discussion at SFI
|-
! 12:00- 12:30 pm
| Lunch (at SFI)
|-
! 12:30 - 12:45
|
 
|-
!12:45 - 1:00
| '''Heat Shock - Cool Shock '''
'' Vincent Danos, Elham Kashefi, Heinz Koeppl, Carlos Messinea, Susanne Schindler''
|-
!1:00 - 1:15
| '''Delay-Coordinate Embedding of an Electroencephalogram Signal'''
''Alessandro Gagliardi''
|-
!1:15 - 1:30
| '''An Agent-based Model of Forest Use with Social Learning'''
''Akiko Satake''
|-
!1:30 - 1:45
| '''Investigating an Agent-based Model of Cooperative Coevolutionary Learning'''
''Brian Tivnan''
|-
!1:45 - 2:00
|'''RNAnet - A toy model for biological networks'''
''Andreea Munteanu & Andrea Tanzer''
|-
!2:00 - 2:15
|'''Negative Event Driven Ethnic Migration'''
''Mike Makowsky, Patrick Meier, Jorge Tavares, & Tamas Makany''
|-
!2:15 - 2:30
|'''Human Navigation Heuristics on the Traveling Salesman Problem (TSP)'''
''Tamas Makany & Mike Makowsky''
|-
!2:30 - 2:45
|'''Simulating Self-Organized Fractals'''
Spandan Tiwari, Jos Elkink & Tetsuya Shoji''
|-
!2:45 - 3:00
|'''Emergence of Anomalous Transport in Self-Propelled Particle Models of Swarms with Locally Regulated Asynchronous Updating'''
''Michael Raghib''
|-
!3:00 - 3:15
|'''On the Topological Entropy of Multivalued Maps'''
''Maria Vivien Visaya''
|-
!3:15 - 3:30
|'''Optimization Algorithms Based on Small-World Phenomenon '''
''Haifeng Du and Jie Shao''
|-
!3:30 - 3:45
|'''Generation of social networks under agency in a resource exchange model'''
''Fabrice Cavarretta – Javier Muñoz Garcia -  Valentin Robu – David Schaefer''
|-
!3:45 - 4:00
|'''Conflict, cooperation and casualties:  the power law of war'''
''Patrick Meier, Elizabeth Leicht and Ryan Woodard''
|-
|-
! 4 - 5 pm  
!nowrap="nowrap"|5:30 pm  
| Poster Session
| Collective Writing of White Paper on Theoretical Medicine- Faculty
|-
|-
! 6:00 pm  
!nowrap="nowrap"|6:30 pm  
| final banquet (Santa Fe Institute)
| Dinner at SFI
|-
|-
!nowrap="nowrap"|9:30 pm
| Shuttle pick-up from SFI to St. John's
|}
|}

Latest revision as of 23:06, 14 July 2006

Workshop Navigation
Sunday, July 16
2:00 pm Shuttle pick up from St. John's to SFI
3:00 pm Welcome - Geoffrey West

Introduction - David Krakauer

4:30 pm Break
5:00 pm Medicine as a Complex Adaptive System - Tin Buchman
6:30 pm Beer and wine, BBQ dinner at SFI
9:00 pm Shuttle pick up from SFI to St. John's
Monday, July 17
8:30 am Shuttle pick-up from St. John's to SFI
9:30 am Cardiology- Ary Goldberger, C.K. Peng, Madelena Costa
11:00 am Break
11:15 am Cardiology con't
12:30 pm Lunch
1:30 pm Lab- Time Series Analysis
4:30 pm Shuttle pick-up from SFI to St. John's, FREE EVENING
7:00 pm Shuttle pick-up from St. John's to Santa Fe Plaza
10:00 pm Shuttle pick-up from Santa Fe Plaza to St. John's
Tuesday, July 18
8:30 am Shuttle pick-up from St. John's to SFI
9:30 am Neuroscience- John Krakauer, Antony Bell
11:00 am Break
11:15 am Neuroscience cont'd
12:30 pm Lunch
1:30 pm Dr. Richard North : Neural Network Applications to Stimulating the Human Nervous System
3:00 pm Lab- Data Analysis
5:00 pm Shuttle pick-up from SFI to Rancho de Chimayo
6:00 pm Dinner at Rancho de Chimayo
9:00 pm Shuttle pick-up from Rancho de Chimayo to St. John's college and Hotel Santa Fe
Wednesday, July 19
8:30 am Shuttle pick-up from St. John's to SFI
9:30 am Immunology- Rob de Boer, Phil Hodgkin
11:00 am Break
11:15 am Immunology cont'd
12:30 pm Lunch
1:30 pm Lab- Theoretical Immunology
5:30 pm Cancer- Thomas Diesboeck
7:00 pm Pizza dinner at SFI
8:30 pm Shuttle pick-up from SFI to St. John's
Thursday, July 20
8:00 am Shuttle pick-up from St. John's to SFI
9:00 am Lab- Cancer
11:00 am Break
11:15 am Lab- Cancer cont'd
12:30 pm Lunch
1:30 pm Shuttle pick-up from SFI to St. John's with a drop at the Plaza and Museum Hill, FREE AFTERNOON AND EVENING
Friday, July 21
8:30 am Shuttle pick-up from St. John's to SFI
9:30 am Chronobiology- Till Roenneberg, Martha Merrow
11:00 am Break
11:15 am Chronobiology cont'd
12:30 pm Lunch
1:30 pm Lab- Biological Oscillators and Aging
4:30 pm Shuttle pick-up from SFI to St. John's
5:15 pm Shuttle pick-up from St. John's to Plaza, students and faculty to make their own way to dinner at El Farol on Canyon Road
7:00 pm Dinner at El Farol, Canyon Road
10:00 pm Shuttle pick-up from El Farol to St. John's
Saturday, July 22
8:30 am Shuttle pick-up from St. John's to SFI
9:30 am The Promise of Systems Biology- Walter Fontana
11:00 am Break
11:15 am The New Physics of Medicine - Geoffrey West
1:00 pm Lunch
2:30 pm Student Presentations
5:00 pm Break
5:30 pm Collective Writing of White Paper on Theoretical Medicine- Faculty
6:30 pm Dinner at SFI
9:30 pm Shuttle pick-up from SFI to St. John's