Santa Fe Institute Events Wiki - User contributions [en]

File:CSSS10Boundary.pdf

2010-06-21T19:47:33Z

Gleibon2: uploaded a new version of "Image:CSSS10Boundary.pdf"

File:CSSS01Quantum.pdf

2010-06-21T19:46:59Z

Gleibon2: uploaded a new version of "Image:CSSS01Quantum.pdf"

File:CSSS10Pickle.pdf

2010-06-21T19:46:25Z

Gleibon2: uploaded a new version of "Image:CSSS10Pickle.pdf"

CSSS 2010 Santa Fe-Readings

2010-06-18T21:03:45Z

Gleibon2:

{{CSSS 2010 Santa Fe}}

Please review readings before lectures. Supplemental material may be posted as well.

===Background Readings===

Please see the [[Background Readings CSSS10|Background Readings]] page for assignments.

===Dan Rockmore===
[[media:IntroCSSS2010.ppt‎ | Dan's Intro Lecture]] 
[[media:LPRS-SL-intro.pdf‎ | Draft intro to stat learning primer ]]
----

===Tanmoy Bhattacharya===

[[Media:Tanmoy_CSSS2010.pdf‎ | Inference in Historical Processes]]
----
===Liz Bradley===

*[http://www.cs.colorado.edu/~lizb/na/ode-notes.pdf Numerical Solution of Differential Equations] 
*[http://www.cs.colorado.edu/~lizb/papers/ida-chapter.pdf Time Series Analysis]
*[[Image:BradleySlides2010.pdf]]
*[[Image:BradleySyllabus2010.pdf]]
----

===Tom Carter===
Here is a link to a page with various background readings -- I'll be talking about some of this material, watch the wiki for days/times
* [http://csustan.csustan.edu/~tom/SFI-CSSS/index.html Summer School readings.]
--------

===Iain Couzin===

*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin10.pdf Complexity. An Informative Itinerary]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin09.pdf Collective Cognition in Animal Groups]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/bazazi08.pdf Collective Motion and Cannibalism in Locust Migratory Bands]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/plugins/bib2html/data/papers/couzin07.pdf Collective Minds]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin05.pdf Effective Leadership and Decision-Making in Animal Groups on the Move]

Lecture Slides 
[[Media:Couzin SFI 2010.pdf | Iain's Lecture Slides]]
-------

===Simon DeDeo===

For the two lectures on "Physics of Reasoning" --
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1957PhRv..106..620J&link_type=EJOURNAL E.T. Jaynes, ''Information Theory and Statistical Mechanics I.'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2006q.bio....11072T&link_type=ABSTRACT Gasper, Schneidman, Berry & Bialek, ''Ising models for networks of real neurons'']
*[http://santafe.edu/~simon/gurikov.pdf Yu. V. Gurikov, ''Configurational Entropy of Water'']
more advanced --
*[http://library.unm.edu/search~S4/?searchtype=t&searcharg=spin+glasses+and+biology&searchscope=4&SORT=D&extended=1&SUBMIT=Search&searchlimits=&searchorigarg=tspin+glasses+biology ''Spin Glasses and Biology'' (ed. Daniel Stein)] (available at SFI library)
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1986JSP....42..647R&link_type=ABSTRACT Reiss, Hammerich & Montroll, ''Thermodynamic treatment of nonphysical systems''] -- the [http://santafe.edu/~simon/Reiss_1986_SFI.pdf off-site fulltext] is available.
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004PhRvE..70f6117P&link_type=ABSTRACT Park & Newman, ''Statistical Mechanics of Networks'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004MNRAS.351L..49L&link_type=ABSTRACT A.R. Liddle, ''How many cosmological parameters?'']

If you only have time to read one, read Jaynes! If you are unable to access any of these articles, feel free to e-mail me at simon@santafe.edu
------

===Owen Densmore===
Steve Guerin and I will present modeling with NetLogo. It will have two parts, one a self-paced wiki tutorial, the second a set of real world examples of modeling we've used professionally.

Read the first page of the tutorial. Then (attempt!) to download, install, and look at the Model Library.
* [http://backspaces.net/wiki/NetLogo_Tutorial NetLogo CSSS Self-Paced Tutorial]

--------

===Peter Dodds===
* [http://www.uvm.edu/~pdodds/teaching/courses/2010-06SFI-networks/index.html Lectures on complex networks + links to further reading.]
--------

===Nathan Eagle===
* [[media:CSSS_Diversity_sm.pptx| Lecture 1]]
* [[media:CSSS_ESS_sm.pptx | Lecture 2]]

===Doug Erwin===
* [[Media:Davidson_Erwin_113_S74_lsh.pdf|Evolution]]
* [[Media:Erwin_2008_TREE.pdf|Niche Construction & Diversity]]
* [[Media:Erwin_2009_Nature_.pdf|Modeling Biodiversity]]
----

===Duncan Foley===
* [[Media:Lec1.pdf| Labor, Capital and Land in the New Economy]]
* [[Media:Albin-FoleyIntro.pdf‎|Economic Complexity and Dynamics in Interactive Systems]]
* [[Media:Minsky.pdf|Hyman Minsky and the Dilemmas of Contemporary Economic Method]]
----

===Laura Fortunato===
* [[Media:Lansing2003.pdf| Complex Systems in Anthropology]]
----

===Greg Leibon===

* [[Media:CSSS10Pickle.pdf | Lecture 1 notes]]
* [[Media:CSSS10Boundary.pdf | Lecture 2 note]]
* [[Media:CSSS01Quantum.pdf | Lecture 3 note]]
* [[Media:CSSS10Pickle(Slides).pdf | Lecture 1 slides]]
* [[Media:CSSS10Boundary(Slides).pdf | Lecture 2 slides]]
* [[Media:CSSS10Quantum(Slides).pdf | Lecture 3 slides]]
* [[Media:shoe.pdf | Markov Chains In A Shoebox]]
* [[Media:pickle.pdf | Conformal Geometry of Markov Chains]]
------

===John Harte===
* [[Media:MaxEntEcology.pdf|Maximum Entropy and the State-Variable Approach to Macroecology]]
* [[Media:Univ_SAR_Ecol_Lett.pdf|Biodiversity Scaling]]
----

===Jure Leskovec===
1) -- models and link prediction in large social networks:

* [http://cs.stanford.edu/people/jure/pubs/kronecker-jmlr10.pdf Kronecker Graphs]
* [http://cs.stanford.edu/people/jure/pubs/microEvol-kdd08.pdf Microscopic Evolution of Social Networks ]
* [http://arxiv.org/abs/0810.1355 Community Structure in Large Networks]

2) -- tracking information diffusion, finding influencers and
detecting disease outbreaks in networks
* [http://cs.stanford.edu/people/jure/pubs/quotes-kdd09.pdf Meme Tracking & News Cycle Dynamics]
* [http://www.cs.cornell.edu/home/kleinber/kdd03-inf.pdf Maximizing the Spread of Influence through a Social Network]
* [http://cs.stanford.edu/people/jure/pubs/detect-kdd07.pdf Outbreak Detection in Social Networks]
* [http://www.blogpulse.com/papers/2005/AdamicGlanceBlogWWW.pdf 2004 Election Political Blogger Networks ]

3) -- models of networks with positive and negative ties
* [http://www.iw3c2.org/WWW2004/docs/1p403.pdf Trust & Distrust]
* [http://cs.stanford.edu/people/jure/pubs/triads-chi10.pdf Signed Networks & Social Media:]
* [http://cs.stanford.edu/people/jure/pubs/signs-www10.pdf Predicting Postive & Negative Links in Online Social Networks]
* [http://cs.stanford.edu/people/jure/pubs/voting-icwsm10.pdf Governance in Social Media]
--------

===Cosma Shalizi===
* [http://arxiv.org/abs/nlin.AO/0409024 Quantifying Self-Organization with Optimal Predictors] 
* [http://arxiv.org/abs/nlin.AO/0307015 Methods and Techniques of Complex Systems Science: An Overview] 
* [http://arxiv.org/abs/cs.LG/0406011 Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences] 
* [http://arxiv.org/abs/nlin.CG/0508001 Automatic Filters for the Detection of Coherent Structure in Spatiotemporal Systems] 
* [http://arxiv.org/abs/cond-mat/9907176 Computational Mechanics: Pattern and Prediction, Structure and Simplicity] 
* [http://arxiv.org/abs/1001.0036 The Computational Structure of Spike Trains] 
* [http://arxiv.org/abs/q-bio.NC/0609008 Discovering Functional Communities in Dynamical Networks] 
* [http://arxiv.org/abs/q-bio.NC/0506009 Measuring Shared Information and Coordinated Activity in Neuronal Networks] 
* [http://arxiv.org/abs/math.PR/0305160 Optimal Nonlinear Prediction of Random Fields on Networks]
--------
[http://www.stat.cmu.edu/~cshalizi/350/ Data mining and statistical learning lecture notes] 
[http://www.stat.cmu.edu/~cshalizi/462/ Chaos, complexity and inference lecture notes]
--------
CSSS lecture slides:
* [[Media:2010-06-15-info-theory.pdf|Information theory]] 
* [[Media:2010-06-15-optimal-prediction.pdf|Optimal prediction]] 
* [[Media:2010-06-16-complexity.pdf|Quantitative complex measures]]

=== Bill Croft, Ian Maddieson, Eric Smith===
* [[Media:Croft2008ARA.pdf‎|Evolutionary Linguistics, I]]

* [[Media:Croft_comp_lang.pdf‎|Evolutionary Linguistics, II]]

* [[Media:Smith_comp_lang.pdf‎ | Opportunities in quantitative historical linguistics]]

* [[Media:Maddieson_comp_lang.pdf‎|Typological patterns in language and their relation to linguistic history]]

----

===Alfred Hübler===

Username/Pass: guest/guest
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?document=http://www.how-why.com/phys194/Notes/index.html Physics 194 notes]
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?home=&document=http://www.how-why.com/ph510/Notes/index.html PHYCS510 UIUC notes]
----
===Scott Pauls===

* [[Media:CSSS10-PDM.pptx | Lecture]] on using the PDM on voting data (.pptx).
* [[Media:LecturePPT.ppt | Lecture(.PPT Version)]]
* [https://docs.google.com/present/edit?id=0AZp-h8X5w1pVZGRuZHgzcXRfMjU0YzJkeHMyY2I&hl=en Google Docs version] for us non-powerpoint people.
* [http://www.math.dartmouth.edu/~pauls/PDM_Toolkit.zip Code package].

CSSS 2010 Santa Fe-Readings

2010-06-18T21:03:17Z

Gleibon2:

{{CSSS 2010 Santa Fe}}

Please review readings before lectures. Supplemental material may be posted as well.

===Background Readings===

Please see the [[Background Readings CSSS10|Background Readings]] page for assignments.

===Dan Rockmore===
[[media:IntroCSSS2010.ppt‎ | Dan's Intro Lecture]] 
[[media:LPRS-SL-intro.pdf‎ | Draft intro to stat learning primer ]]
----

===Tanmoy Bhattacharya===

[[Media:Tanmoy_CSSS2010.pdf‎ | Inference in Historical Processes]]
----
===Liz Bradley===

*[http://www.cs.colorado.edu/~lizb/na/ode-notes.pdf Numerical Solution of Differential Equations] 
*[http://www.cs.colorado.edu/~lizb/papers/ida-chapter.pdf Time Series Analysis]
*[[Image:BradleySlides2010.pdf]]
*[[Image:BradleySyllabus2010.pdf]]
----

===Tom Carter===
Here is a link to a page with various background readings -- I'll be talking about some of this material, watch the wiki for days/times
* [http://csustan.csustan.edu/~tom/SFI-CSSS/index.html Summer School readings.]
--------

===Iain Couzin===

*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin10.pdf Complexity. An Informative Itinerary]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin09.pdf Collective Cognition in Animal Groups]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/bazazi08.pdf Collective Motion and Cannibalism in Locust Migratory Bands]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/plugins/bib2html/data/papers/couzin07.pdf Collective Minds]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin05.pdf Effective Leadership and Decision-Making in Animal Groups on the Move]

Lecture Slides 
[[Media:Couzin SFI 2010.pdf | Iain's Lecture Slides]]
-------

===Simon DeDeo===

For the two lectures on "Physics of Reasoning" --
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1957PhRv..106..620J&link_type=EJOURNAL E.T. Jaynes, ''Information Theory and Statistical Mechanics I.'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2006q.bio....11072T&link_type=ABSTRACT Gasper, Schneidman, Berry & Bialek, ''Ising models for networks of real neurons'']
*[http://santafe.edu/~simon/gurikov.pdf Yu. V. Gurikov, ''Configurational Entropy of Water'']
more advanced --
*[http://library.unm.edu/search~S4/?searchtype=t&searcharg=spin+glasses+and+biology&searchscope=4&SORT=D&extended=1&SUBMIT=Search&searchlimits=&searchorigarg=tspin+glasses+biology ''Spin Glasses and Biology'' (ed. Daniel Stein)] (available at SFI library)
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1986JSP....42..647R&link_type=ABSTRACT Reiss, Hammerich & Montroll, ''Thermodynamic treatment of nonphysical systems''] -- the [http://santafe.edu/~simon/Reiss_1986_SFI.pdf off-site fulltext] is available.
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004PhRvE..70f6117P&link_type=ABSTRACT Park & Newman, ''Statistical Mechanics of Networks'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004MNRAS.351L..49L&link_type=ABSTRACT A.R. Liddle, ''How many cosmological parameters?'']

If you only have time to read one, read Jaynes! If you are unable to access any of these articles, feel free to e-mail me at simon@santafe.edu
------

===Owen Densmore===
Steve Guerin and I will present modeling with NetLogo. It will have two parts, one a self-paced wiki tutorial, the second a set of real world examples of modeling we've used professionally.

Read the first page of the tutorial. Then (attempt!) to download, install, and look at the Model Library.
* [http://backspaces.net/wiki/NetLogo_Tutorial NetLogo CSSS Self-Paced Tutorial]

--------

===Peter Dodds===
* [http://www.uvm.edu/~pdodds/teaching/courses/2010-06SFI-networks/index.html Lectures on complex networks + links to further reading.]
--------

===Nathan Eagle===
* [[media:CSSS_Diversity_sm.pptx| Lecture 1]]
* [[media:CSSS_ESS_sm.pptx | Lecture 2]]

===Doug Erwin===
* [[Media:Davidson_Erwin_113_S74_lsh.pdf|Evolution]]
* [[Media:Erwin_2008_TREE.pdf|Niche Construction & Diversity]]
* [[Media:Erwin_2009_Nature_.pdf|Modeling Biodiversity]]
----

===Duncan Foley===
* [[Media:Lec1.pdf| Labor, Capital and Land in the New Economy]]
* [[Media:Albin-FoleyIntro.pdf‎|Economic Complexity and Dynamics in Interactive Systems]]
* [[Media:Minsky.pdf|Hyman Minsky and the Dilemmas of Contemporary Economic Method]]
----

===Laura Fortunato===
* [[Media:Lansing2003.pdf| Complex Systems in Anthropology]]
----

===Greg Leibon===

* [[Media:CSSS10Pickle.pdf | Lecture 1 notes]]
* [[Media:CSSS10Boundary.pdf | Lecture 2 note]]
* [[Media:CSSS01Quantum.pdf | Lecture 2 note]]
* [[Media:CSSS10Pickle(Slides).pdf | Lecture 1 slides]]
* [[Media:CSSS10Boundary(Slides).pdf | Lecture 2 slides]]
* [[Media:CSSS10Quantum(Slides).pdf | Lecture 3 slides]]
* [[Media:shoe.pdf | Markov Chains In A Shoebox]]
* [[Media:pickle.pdf | Conformal Geometry of Markov Chains]]
------

===John Harte===
* [[Media:MaxEntEcology.pdf|Maximum Entropy and the State-Variable Approach to Macroecology]]
* [[Media:Univ_SAR_Ecol_Lett.pdf|Biodiversity Scaling]]
----

===Jure Leskovec===
1) -- models and link prediction in large social networks:

* [http://cs.stanford.edu/people/jure/pubs/kronecker-jmlr10.pdf Kronecker Graphs]
* [http://cs.stanford.edu/people/jure/pubs/microEvol-kdd08.pdf Microscopic Evolution of Social Networks ]
* [http://arxiv.org/abs/0810.1355 Community Structure in Large Networks]

2) -- tracking information diffusion, finding influencers and
detecting disease outbreaks in networks
* [http://cs.stanford.edu/people/jure/pubs/quotes-kdd09.pdf Meme Tracking & News Cycle Dynamics]
* [http://www.cs.cornell.edu/home/kleinber/kdd03-inf.pdf Maximizing the Spread of Influence through a Social Network]
* [http://cs.stanford.edu/people/jure/pubs/detect-kdd07.pdf Outbreak Detection in Social Networks]
* [http://www.blogpulse.com/papers/2005/AdamicGlanceBlogWWW.pdf 2004 Election Political Blogger Networks ]

3) -- models of networks with positive and negative ties
* [http://www.iw3c2.org/WWW2004/docs/1p403.pdf Trust & Distrust]
* [http://cs.stanford.edu/people/jure/pubs/triads-chi10.pdf Signed Networks & Social Media:]
* [http://cs.stanford.edu/people/jure/pubs/signs-www10.pdf Predicting Postive & Negative Links in Online Social Networks]
* [http://cs.stanford.edu/people/jure/pubs/voting-icwsm10.pdf Governance in Social Media]
--------

===Cosma Shalizi===
* [http://arxiv.org/abs/nlin.AO/0409024 Quantifying Self-Organization with Optimal Predictors] 
* [http://arxiv.org/abs/nlin.AO/0307015 Methods and Techniques of Complex Systems Science: An Overview] 
* [http://arxiv.org/abs/cs.LG/0406011 Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences] 
* [http://arxiv.org/abs/nlin.CG/0508001 Automatic Filters for the Detection of Coherent Structure in Spatiotemporal Systems] 
* [http://arxiv.org/abs/cond-mat/9907176 Computational Mechanics: Pattern and Prediction, Structure and Simplicity] 
* [http://arxiv.org/abs/1001.0036 The Computational Structure of Spike Trains] 
* [http://arxiv.org/abs/q-bio.NC/0609008 Discovering Functional Communities in Dynamical Networks] 
* [http://arxiv.org/abs/q-bio.NC/0506009 Measuring Shared Information and Coordinated Activity in Neuronal Networks] 
* [http://arxiv.org/abs/math.PR/0305160 Optimal Nonlinear Prediction of Random Fields on Networks]
--------
[http://www.stat.cmu.edu/~cshalizi/350/ Data mining and statistical learning lecture notes] 
[http://www.stat.cmu.edu/~cshalizi/462/ Chaos, complexity and inference lecture notes]
--------
CSSS lecture slides:
* [[Media:2010-06-15-info-theory.pdf|Information theory]] 
* [[Media:2010-06-15-optimal-prediction.pdf|Optimal prediction]] 
* [[Media:2010-06-16-complexity.pdf|Quantitative complex measures]]

=== Bill Croft, Ian Maddieson, Eric Smith===
* [[Media:Croft2008ARA.pdf‎|Evolutionary Linguistics, I]]

* [[Media:Croft_comp_lang.pdf‎|Evolutionary Linguistics, II]]

* [[Media:Smith_comp_lang.pdf‎ | Opportunities in quantitative historical linguistics]]

* [[Media:Maddieson_comp_lang.pdf‎|Typological patterns in language and their relation to linguistic history]]

----

===Alfred Hübler===

Username/Pass: guest/guest
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?document=http://www.how-why.com/phys194/Notes/index.html Physics 194 notes]
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?home=&document=http://www.how-why.com/ph510/Notes/index.html PHYCS510 UIUC notes]
----
===Scott Pauls===

* [[Media:CSSS10-PDM.pptx | Lecture]] on using the PDM on voting data (.pptx).
* [[Media:LecturePPT.ppt | Lecture(.PPT Version)]]
* [https://docs.google.com/present/edit?id=0AZp-h8X5w1pVZGRuZHgzcXRfMjU0YzJkeHMyY2I&hl=en Google Docs version] for us non-powerpoint people.
* [http://www.math.dartmouth.edu/~pauls/PDM_Toolkit.zip Code package].

File:CSSS10Quantum(Slides).pdf

2010-06-18T20:59:15Z

Gleibon2:

File:CSSS01Quantum.pdf

2010-06-18T20:57:39Z

Gleibon2:

CSSS 2010 Santa Fe-Readings

2010-06-16T22:08:34Z

Gleibon2:

{{CSSS 2010 Santa Fe}}

Please review readings before lectures. Supplemental material may be posted as well.

===Background Readings===

Please see the [[Background Readings CSSS10|Background Readings]] page for assignments.

===Dan Rockmore===
[[media:IntroCSSS2010.ppt‎ | Dan's Intro Lecture]] 
[[media:LPRS-SL-intro.pdf‎ | Draft intro to stat learning primer ]]
----

===Tanmoy Bhattacharya===

[[Media:Tanmoy_CSSS2010.pdf‎ | Inference in Historical Processes]]
----
===Liz Bradley===

*[http://www.cs.colorado.edu/~lizb/na/ode-notes.pdf Numerical Solution of Differential Equations] 
*[http://www.cs.colorado.edu/~lizb/papers/ida-chapter.pdf Time Series Analysis]
*[[Image:BradleySlides2010.pdf]]
*[[Image:BradleySyllabus2010.pdf]]
----

===Tom Carter===
Here is a link to a page with various background readings -- I'll be talking about some of this material, watch the wiki for days/times
* [http://csustan.csustan.edu/~tom/SFI-CSSS/index.html Summer School readings.]
--------

===Iain Couzin===

*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin10.pdf Complexity. An Informative Itinerary]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin09.pdf Collective Cognition in Animal Groups]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/bazazi08.pdf Collective Motion and Cannibalism in Locust Migratory Bands]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/plugins/bib2html/data/papers/couzin07.pdf Collective Minds]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin05.pdf Effective Leadership and Decision-Making in Animal Groups on the Move]
-------

===Simon DeDeo===

For the two lectures on "Physics of Reasoning" --
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1957PhRv..106..620J&link_type=EJOURNAL E.T. Jaynes, ''Information Theory and Statistical Mechanics I.'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2006q.bio....11072T&link_type=ABSTRACT Gasper, Schneidman, Berry & Bialek, ''Ising models for networks of real neurons'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1986JSP....42..647R&link_type=ABSTRACT Reiss, Hammerich & Montroll, ''Thermodynamic treatment of nonphysical systems''] -- the [http://santafe.edu/~simon/Reiss_1986_SFI.pdf off-site fulltext] is available.
more advanced --
*[http://library.unm.edu/search~S4/?searchtype=t&searcharg=spin+glasses+and+biology&searchscope=4&SORT=D&extended=1&SUBMIT=Search&searchlimits=&searchorigarg=tspin+glasses+biology ''Spin Glasses and Biology'' (ed. Daniel Stein)] (available at SFI library)
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004PhRvE..70f6117P&link_type=ABSTRACT Park & Newman, ''Statistical Mechanics of Networks'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004MNRAS.351L..49L&link_type=ABSTRACT A.R. Liddle, ''How many cosmological parameters?'']

If you only have time to read one, read Jaynes! If you are unable to access any of these articles, feel free to e-mail me at simon@santafe.edu
------

===Owen Densmore===
Steve Guerin and I will present modeling with NetLogo. It will have two parts, one a self-paced wiki tutorial, the second a set of real world examples of modeling we've used professionally.

Read the first page of the tutorial. Then (attempt!) to download, install, and look at the Model Library.
* [http://backspaces.net/wiki/NetLogo_Tutorial NetLogo CSSS Self-Paced Tutorial]

--------

===Peter Dodds===
* [http://www.uvm.edu/~pdodds/teaching/courses/2010-06SFI-networks/index.html Lectures on complex networks + links to further reading.]
--------

===Nathan Eagle===
* [[media:CSSS_Diversity_sm.pptx| Lecture 1]]
* [[media:CSSS_ESS_sm.pptx | Lecture 2]]

===Doug Erwin===
* [[Media:Davidson_Erwin_113_S74_lsh.pdf|Evolution]]
* [[Media:Erwin_2008_TREE.pdf|Niche Construction & Diversity]]
* [[Media:Erwin_2009_Nature_.pdf|Modeling Biodiversity]]
----

===Duncan Foley===
* [[Media:Lec1.pdf| Labor, Capital and Land in the New Economy]]
* [[Media:Albin-FoleyIntro.pdf‎|Economic Complexity and Dynamics in Interactive Systems]]
* [[Media:Minsky.pdf|Hyman Minsky and the Dilemmas of Contemporary Economic Method]]
----

===Laura Fortunato===
* [[Media:Lansing2003.pdf| Complex Systems in Anthropology]]
----

===Greg Leibon===

* [[Media:CSSS10Pickle.pdf | Lecture one notes]]
* [[Media:CSSS10Boundary.pdf | Lecture two note]]
* [[Media:CSSS10Pickle(Slides).pdf | Lecture one slides]]
* [[Media:CSSS10Boundary(Slides).pdf | Lecture two slides]]
* [[Media:shoe.pdf | Markov Chains In A Shoebox]]
* [[Media:pickle.pdf | Conformal Geometry of Markov Chains]]
------

===John Harte===
* [[Media:MaxEntEcology.pdf|Maximum Entropy and the State-Variable Approach to Macroecology]]
* [[Media:Univ_SAR_Ecol_Lett.pdf|Biodiversity Scaling]]
----

===Jure Leskovec===
1) -- models and link prediction in large social networks:

* [http://cs.stanford.edu/people/jure/pubs/kronecker-jmlr10.pdf Kronecker Graphs]
* [http://cs.stanford.edu/people/jure/pubs/microEvol-kdd08.pdf Microscopic Evolution of Social Networks ]
* [http://arxiv.org/abs/0810.1355 Community Structure in Large Networks]

2) -- tracking information diffusion, finding influencers and
detecting disease outbreaks in networks
* [http://cs.stanford.edu/people/jure/pubs/quotes-kdd09.pdf Meme Tracking & News Cycle Dynamics]
* [http://www.cs.cornell.edu/home/kleinber/kdd03-inf.pdf Maximizing the Spread of Influence through a Social Network]
* [http://cs.stanford.edu/people/jure/pubs/detect-kdd07.pdf Outbreak Detection in Social Networks]
* [http://www.blogpulse.com/papers/2005/AdamicGlanceBlogWWW.pdf 2004 Election Political Blogger Networks ]

3) -- models of networks with positive and negative ties
* [http://www.iw3c2.org/WWW2004/docs/1p403.pdf Trust & Distrust]
* [http://cs.stanford.edu/people/jure/pubs/triads-chi10.pdf Signed Networks & Social Media:]
* [http://cs.stanford.edu/people/jure/pubs/signs-www10.pdf Predicting Postive & Negative Links in Online Social Networks]
* [http://cs.stanford.edu/people/jure/pubs/voting-icwsm10.pdf Governance in Social Media]
--------

===Cosma Shalizi===
* [http://arxiv.org/abs/nlin.AO/0409024 Quantifying Self-Organization with Optimal Predictors] 
* [http://arxiv.org/abs/nlin.AO/0307015 Methods and Techniques of Complex Systems Science: An Overview] 
* [http://arxiv.org/abs/cs.LG/0406011 Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences] 
* [http://arxiv.org/abs/nlin.CG/0508001 Automatic Filters for the Detection of Coherent Structure in Spatiotemporal Systems] 
* [http://arxiv.org/abs/cond-mat/9907176 Computational Mechanics: Pattern and Prediction, Structure and Simplicity] 
* [http://arxiv.org/abs/1001.0036 The Computational Structure of Spike Trains] 
* [http://arxiv.org/abs/q-bio.NC/0609008 Discovering Functional Communities in Dynamical Networks] 
* [http://arxiv.org/abs/q-bio.NC/0506009 Measuring Shared Information and Coordinated Activity in Neuronal Networks] 
* [http://arxiv.org/abs/math.PR/0305160 Optimal Nonlinear Prediction of Random Fields on Networks]
--------
[http://www.stat.cmu.edu/~cshalizi/350/ Data mining and statistical learning lecture notes] 
[http://www.stat.cmu.edu/~cshalizi/462/ Chaos, complexity and inference lecture notes]
--------
CSSS lecture slides:
* [[Media:2010-06-15-info-theory.pdf|Information theory]] 
* [[Media:2010-06-15-optimal-prediction.pdf|Optimal prediction]] 
* [[Media:2010-06-16-complexity.pdf|Quantitative complex measures]]

=== Bill Croft, Ian Maddieson, Eric Smith===
* [[Media:Croft2008ARA.pdf‎|Evolutionary Linguistics, I]]

* [[Media:CCroft_comp_lang.pd‎|Evolutionary Linguistics, II]]

* [[Media:Smith_comp_lang.pdf‎|Opportunities in quantitative historical linguistics]]

* [[Media:Maddieson_comp_lang.pdf‎|Typological patterns in language and their relation to linguistic history]]

----

===Alfred Hübler===
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?document=http://www.how-why.com/phys194/Notes/index.html Physics 194 notes]
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?home=&document=http://www.how-why.com/ph510/Notes/index.html PHYCS510 UIUC notes]
----
===Scott Pauls===

* [[Media:CSSS10-PDM.pptx | Lecture]] on using the PDM on voting data.
* [http://www.math.dartmouth.edu/~pauls/PDM_Toolkit.zip Code package].

File:CSSS10Pickle.pdf

2010-06-16T22:03:59Z

Gleibon2: uploaded a new version of "Image:CSSS10Pickle.pdf"

File:CSSS10Boundary(Slides).pdf

2010-06-16T22:03:20Z

Gleibon2:

File:CSSS10Boundary.pdf

2010-06-16T22:02:35Z

Gleibon2:

CSSS 2010 Santa Fe-Readings

2010-06-15T18:22:59Z

Gleibon2:

{{CSSS 2010 Santa Fe}}

Please review readings before lectures. Supplemental material may be posted as well.

===Background Readings===

Please see the [[Background Readings CSSS10|Background Readings]] page for assignments.

===Dan Rockmore===
[[media:IntroCSSS2010.ppt‎ | Dan's Intro Lecture]] 
[[media:LPRS-SL-intro.pdf‎ | Draft intro to stat learning primer ]]
----

===Tanmoy Bhattacharya===

[[Media:Tanmoy_CSSS2010.pdf‎ | Inference in Historical Processes]]
----
===Liz Bradley===

*[http://www.cs.colorado.edu/~lizb/na/ode-notes.pdf Numerical Solution of Differential Equations] 
*[http://www.cs.colorado.edu/~lizb/papers/ida-chapter.pdf Time Series Analysis]
*[[Image:BradleySlides2010.pdf]]
*[[Image:BradleySyllabus2010.pdf]]
----

===Tom Carter===
Here is a link to a page with various background readings -- I'll be talking about some of this material, watch the wiki for days/times
* [http://csustan.csustan.edu/~tom/SFI-CSSS/index.html Summer School readings.]
--------

===Iain Couzin===

*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin10.pdf Complexity. An Informative Itinerary]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin09.pdf Collective Cognition in Animal Groups]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/bazazi08.pdf Collective Motion and Cannibalism in Locust Migratory Bands]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/plugins/bib2html/data/papers/couzin07.pdf Collective Minds]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin05.pdf Effective Leadership and Decision-Making in Animal Groups on the Move]
-------

===Simon DeDeo===

For the two lectures on "Physics of Reasoning" --
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1957PhRv..106..620J&link_type=EJOURNAL E.T. Jaynes, ''Information Theory and Statistical Mechanics I.'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2006q.bio....11072T&link_type=ABSTRACT Gasper, Schneidman, Berry & Bialek, ''Ising models for networks of real neurons'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1986JSP....42..647R&link_type=ABSTRACT Reiss, Hammerich & Montroll, ''Thermodynamic treatment of nonphysical systems''] -- the [http://santafe.edu/~simon/Reiss_1986_SFI.pdf off-site fulltext] is available.
more advanced --
*[http://library.unm.edu/search~S4/?searchtype=t&searcharg=spin+glasses+and+biology&searchscope=4&SORT=D&extended=1&SUBMIT=Search&searchlimits=&searchorigarg=tspin+glasses+biology ''Spin Glasses and Biology'' (ed. Daniel Stein)] (available at SFI library)
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004PhRvE..70f6117P&link_type=ABSTRACT Park & Newman, ''Statistical Mechanics of Networks'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004MNRAS.351L..49L&link_type=ABSTRACT A.R. Liddle, ''How many cosmological parameters?'']

If you only have time to read one, read Jaynes! If you are unable to access any of these articles, feel free to e-mail me at simon@santafe.edu
------

===Owen Densmore===
Steve Guerin and I will present modeling with NetLogo. It will have two parts, one a self-paced wiki tutorial, the second a set of real world examples of modeling we've used professionally.

Read the first page of the tutorial. Then (attempt!) to download, install, and look at the Model Library.
* [http://backspaces.net/wiki/NetLogo_Tutorial NetLogo CSSS Self-Paced Tutorial]

--------

===Peter Dodds===
* [http://www.uvm.edu/~pdodds/teaching/courses/2010-06SFI-networks/index.html Lectures on complex networks + links to further reading.]
--------

===Nathan Eagle===
* [[media:CSSS_Diversity_sm.pptx| Lecture 1]]
* [[media:CSSS_ESS_sm.pptx | Lecture 2]]

===Doug Erwin===
* [[Media:Davidson_Erwin_113_S74_lsh.pdf|Evolution]]
* [[Media:Erwin_2008_TREE.pdf|Niche Construction & Diversity]]
* [[Media:Erwin_2009_Nature_.pdf|Modeling Biodiversity]]
----

===Duncan Foley===
* [[Media:Lec1.pdf| Labor, Capital and Land in the New Economy]]
* [[Media:Albin-FoleyIntro.pdf‎|Economic Complexity and Dynamics in Interactive Systems]]
* [[Media:Minsky.pdf|Hyman Minsky and the Dilemmas of Contemporary Economic Method]]
----

===Laura Fortunato===
* [[Media:Lansing2003.pdf| Complex Systems in Anthropology]]
----

===Greg Leibon===

* [[Media:CSSS10Pickle.pdf | Lecture one notes]]
* [[Media:CSSS10Pickle(Slides).pdf| Lecture one slides]]
------

===John Harte===
* [[Media:MaxEntEcology.pdf|Maximum Entropy and the State-Variable Approach to Macroecology]]
* [[Media:Univ_SAR_Ecol_Lett.pdf|Biodiversity Scaling]]
----

===Jure Leskovec===
1) -- models and link prediction in large social networks:

* [http://cs.stanford.edu/people/jure/pubs/kronecker-jmlr10.pdf Kronecker Graphs]
* [http://cs.stanford.edu/people/jure/pubs/microEvol-kdd08.pdf Microscopic Evolution of Social Networks ]
* [http://arxiv.org/abs/0810.1355 Community Structure in Large Networks]

2) -- tracking information diffusion, finding influencers and
detecting disease outbreaks in networks
* [http://cs.stanford.edu/people/jure/pubs/quotes-kdd09.pdf Meme Tracking & News Cycle Dynamics]
* [http://www.cs.cornell.edu/home/kleinber/kdd03-inf.pdf Maximizing the Spread of Influence through a Social Network]
* [http://cs.stanford.edu/people/jure/pubs/detect-kdd07.pdf Outbreak Detection in Social Networks]
* [http://www.blogpulse.com/papers/2005/AdamicGlanceBlogWWW.pdf 2004 Election Political Blogger Networks ]

3) -- models of networks with positive and negative ties
* [http://www.iw3c2.org/WWW2004/docs/1p403.pdf Trust & Distrust]
* [http://cs.stanford.edu/people/jure/pubs/triads-chi10.pdf Signed Networks & Social Media:]
* [http://cs.stanford.edu/people/jure/pubs/signs-www10.pdf Predicting Postive & Negative Links in Online Social Networks]
* [http://cs.stanford.edu/people/jure/pubs/voting-icwsm10.pdf Governance in Social Media]
--------

===Cosma Shalizi===
Adaptation and Self-Organizing Systems 
* [http://arxiv.org/abs/nlin.AO/0409024 Quantifying Self-Organization with Optimal Predictors] 
* [http://arxiv.org/abs/nlin.AO/0307015 Methods and Techniques of Complex Systems Science: An Overview] 
Artificial Intelligence 
* [http://arxiv.org/abs/cs.LG/0406011 Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences] 
Cellular Automata and Lattice Gases 
* [http://arxiv.org/abs/nlin.CG/0508001 Automatic Filters for the Detection of Coherent Structure in Spatiotemporal Systems] 
Statistical/Computational Mechanics 
* [http://arxiv.org/abs/cond-mat/9907176 Statistical Mechanics/Computational Mechanics: Pattern and Prediction, Structure and Simplicity] 
Neurons and Cognition 
* [http://arxiv.org/abs/1001.0036 The Computational Structure of Spike Trains] 
* [http://arxiv.org/abs/q-bio.NC/0609008 Discovering Functional Communities in Dynamical Networks] 
* [http://arxiv.org/abs/q-bio.NC/0506009 Measuring Shared Information and Coordinated Activity in Neuronal Networks] 

Probability 
* [http://arxiv.org/abs/math.PR/0305160 Optimal Nonlinear Prediction of Random Fields on Networks]
--------

===Eric Smith===
* [[Media:Croft2008ARA.pdf‎|Evolutionary Linguistics]]
----

===Alfred Hübler===
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?document=http://www.how-why.com/phys194/Notes/index.html Physics 194 notes]
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?home=&document=http://www.how-why.com/ph510/Notes/index.html PHYCS510 UIUC notes]

File:CSSS10Pickle(Slides).pdf

2010-06-15T18:20:28Z

Gleibon2:

CSSS 2010 Santa Fe-Readings

2010-06-15T18:19:49Z

Gleibon2:

{{CSSS 2010 Santa Fe}}

Please review readings before lectures. Supplemental material may be posted as well.

===Background Readings===

Please see the [[Background Readings CSSS10|Background Readings]] page for assignments.

===Dan Rockmore===
[[media:IntroCSSS2010.ppt‎ | Dan's Intro Lecture]] 
[[media:LPRS-SL-intro.pdf‎ | Draft intro to stat learning primer ]]
----

===Tanmoy Bhattacharya===

[[Media:Tanmoy_CSSS2010.pdf‎ | Inference in Historical Processes]]
----
===Liz Bradley===

*[http://www.cs.colorado.edu/~lizb/na/ode-notes.pdf Numerical Solution of Differential Equations] 
*[http://www.cs.colorado.edu/~lizb/papers/ida-chapter.pdf Time Series Analysis]
*[[Image:BradleySlides2010.pdf]]
*[[Image:BradleySyllabus2010.pdf]]
----

===Tom Carter===
Here is a link to a page with various background readings -- I'll be talking about some of this material, watch the wiki for days/times
* [http://csustan.csustan.edu/~tom/SFI-CSSS/index.html Summer School readings.]
--------

===Iain Couzin===

*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin10.pdf Complexity. An Informative Itinerary]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin09.pdf Collective Cognition in Animal Groups]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/bazazi08.pdf Collective Motion and Cannibalism in Locust Migratory Bands]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/plugins/bib2html/data/papers/couzin07.pdf Collective Minds]
*[http://webscript.princeton.edu/%7Eicouzin/website/wp-content/uploads/2010/05/couzin05.pdf Effective Leadership and Decision-Making in Animal Groups on the Move]
-------

===Simon DeDeo===

For the two lectures on "Physics of Reasoning" --
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1957PhRv..106..620J&link_type=EJOURNAL E.T. Jaynes, ''Information Theory and Statistical Mechanics I.'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2006q.bio....11072T&link_type=ABSTRACT Gasper, Schneidman, Berry & Bialek, ''Ising models for networks of real neurons'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=1986JSP....42..647R&link_type=ABSTRACT Reiss, Hammerich & Montroll, ''Thermodynamic treatment of nonphysical systems''] -- the [http://santafe.edu/~simon/Reiss_1986_SFI.pdf off-site fulltext] is available.
more advanced --
*[http://library.unm.edu/search~S4/?searchtype=t&searcharg=spin+glasses+and+biology&searchscope=4&SORT=D&extended=1&SUBMIT=Search&searchlimits=&searchorigarg=tspin+glasses+biology ''Spin Glasses and Biology'' (ed. Daniel Stein)] (available at SFI library)
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004PhRvE..70f6117P&link_type=ABSTRACT Park & Newman, ''Statistical Mechanics of Networks'']
*[http://adsabs.harvard.edu/cgi-bin/nph-data_query?bibcode=2004MNRAS.351L..49L&link_type=ABSTRACT A.R. Liddle, ''How many cosmological parameters?'']

If you only have time to read one, read Jaynes! If you are unable to access any of these articles, feel free to e-mail me at simon@santafe.edu
------

===Owen Densmore===
Steve Guerin and I will present modeling with NetLogo. It will have two parts, one a self-paced wiki tutorial, the second a set of real world examples of modeling we've used professionally.

Read the first page of the tutorial. Then (attempt!) to download, install, and look at the Model Library.
* [http://backspaces.net/wiki/NetLogo_Tutorial NetLogo CSSS Self-Paced Tutorial]

--------

===Peter Dodds===
* [http://www.uvm.edu/~pdodds/teaching/courses/2010-06SFI-networks/index.html Lectures on complex networks + links to further reading.]
--------

===Nathan Eagle===
* [[media:CSSS_Diversity_sm.pptx| Lecture 1]]
* [[media:CSSS_ESS_sm.pptx | Lecture 2]]

===Doug Erwin===
* [[Media:Davidson_Erwin_113_S74_lsh.pdf|Evolution]]
* [[Media:Erwin_2008_TREE.pdf|Niche Construction & Diversity]]
* [[Media:Erwin_2009_Nature_.pdf|Modeling Biodiversity]]
----

===Duncan Foley===
* [[Media:Lec1.pdf| Labor, Capital and Land in the New Economy]]
* [[Media:Albin-FoleyIntro.pdf‎|Economic Complexity and Dynamics in Interactive Systems]]
* [[Media:Minsky.pdf|Hyman Minsky and the Dilemmas of Contemporary Economic Method]]
----

===Laura Fortunato===
* [[Media:Lansing2003.pdf| Complex Systems in Anthropology]]
----

===Greg Leibon===

* [[Media:CSSS10Pickle.pdf | Lecture one notes]]

------

===John Harte===
* [[Media:MaxEntEcology.pdf|Maximum Entropy and the State-Variable Approach to Macroecology]]
* [[Media:Univ_SAR_Ecol_Lett.pdf|Biodiversity Scaling]]
----

===Jure Leskovec===
1) -- models and link prediction in large social networks:

* [http://cs.stanford.edu/people/jure/pubs/kronecker-jmlr10.pdf Kronecker Graphs]
* [http://cs.stanford.edu/people/jure/pubs/microEvol-kdd08.pdf Microscopic Evolution of Social Networks ]
* [http://arxiv.org/abs/0810.1355 Community Structure in Large Networks]

2) -- tracking information diffusion, finding influencers and
detecting disease outbreaks in networks
* [http://cs.stanford.edu/people/jure/pubs/quotes-kdd09.pdf Meme Tracking & News Cycle Dynamics]
* [http://www.cs.cornell.edu/home/kleinber/kdd03-inf.pdf Maximizing the Spread of Influence through a Social Network]
* [http://cs.stanford.edu/people/jure/pubs/detect-kdd07.pdf Outbreak Detection in Social Networks]
* [http://www.blogpulse.com/papers/2005/AdamicGlanceBlogWWW.pdf 2004 Election Political Blogger Networks ]

3) -- models of networks with positive and negative ties
* [http://www.iw3c2.org/WWW2004/docs/1p403.pdf Trust & Distrust]
* [http://cs.stanford.edu/people/jure/pubs/triads-chi10.pdf Signed Networks & Social Media:]
* [http://cs.stanford.edu/people/jure/pubs/signs-www10.pdf Predicting Postive & Negative Links in Online Social Networks]
* [http://cs.stanford.edu/people/jure/pubs/voting-icwsm10.pdf Governance in Social Media]
--------

===Cosma Shalizi===
Adaptation and Self-Organizing Systems 
* [http://arxiv.org/abs/nlin.AO/0409024 Quantifying Self-Organization with Optimal Predictors] 
* [http://arxiv.org/abs/nlin.AO/0307015 Methods and Techniques of Complex Systems Science: An Overview] 
Artificial Intelligence 
* [http://arxiv.org/abs/cs.LG/0406011 Blind Construction of Optimal Nonlinear Recursive Predictors for Discrete Sequences] 
Cellular Automata and Lattice Gases 
* [http://arxiv.org/abs/nlin.CG/0508001 Automatic Filters for the Detection of Coherent Structure in Spatiotemporal Systems] 
Statistical/Computational Mechanics 
* [http://arxiv.org/abs/cond-mat/9907176 Statistical Mechanics/Computational Mechanics: Pattern and Prediction, Structure and Simplicity] 
Neurons and Cognition 
* [http://arxiv.org/abs/1001.0036 The Computational Structure of Spike Trains] 
* [http://arxiv.org/abs/q-bio.NC/0609008 Discovering Functional Communities in Dynamical Networks] 
* [http://arxiv.org/abs/q-bio.NC/0506009 Measuring Shared Information and Coordinated Activity in Neuronal Networks] 

Probability 
* [http://arxiv.org/abs/math.PR/0305160 Optimal Nonlinear Prediction of Random Fields on Networks]
--------

===Eric Smith===
* [[Media:Croft2008ARA.pdf‎|Evolutionary Linguistics]]
----

===Alfred Hübler===
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?document=http://www.how-why.com/phys194/Notes/index.html Physics 194 notes]
* [http://www.how-why.com/cgi-bin/cyberprof/os.exe?home=&document=http://www.how-why.com/ph510/Notes/index.html PHYCS510 UIUC notes]