Santa Fe Institute Events Wiki - User contributions [en]

CSSS 2007 Santa Fe-Readings

2007-06-24T18:14:33Z

Gleibon: /* Gregory Leibon */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[Media:CSS07Part1.pdf|Patterrn Recognition and Markets I]] 
[[Media:CSS07Part2.pdf|Patterrn Recognition and Markets II]] 
[[Media:S&P500CSS07.zip|Data From Lecture]] 

===Doyne Farmer: Finance I-II===

'''- with Austin Gerig'''
[[media:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[mediae:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[media:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Readings

2007-06-24T18:13:02Z

Gleibon: /* Gregory Leibon */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[Media:CSS07Part1.pdf|Patterrn Recognition and Markets I]] 
[[Media:CSS07Part2.pdf|Patterrn Recognition and Markets II]] 
[[Media:S&P500CSS07.zip|Patterrn Recognition and Markets II]] 

===Doyne Farmer: Finance I-II===

'''- with Austin Gerig'''
[[media:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[mediae:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[media:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Readings

2007-06-21T22:33:37Z

Gleibon: /* Gregory Leibon */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[Media:CSS07Part1.pdf|Patterrn Recognition and Markets I]] 
[[Media:CSS07Part2.pdf|Patterrn Recognition and Markets II]] 

===Doyne Farmer===
Finance/Economics 

'''- with Austin Gerig '''
[[Image:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[Image:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[Image:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Readings

2007-06-21T22:33:02Z

Gleibon: /* Week Three: Finance/Economy */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[Media:CSS07Part1.pdf|Patterrn Recognition and Markets I]] 
[[Media:CSS07Part2.pdf|Patterrn Recognition and Markets II]] 

===Doyne Farmer===
Finance/Economics 

'''- with Austin Gerig '''
[[Image:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[Image:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[Image:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Readings

2007-06-21T22:31:41Z

Gleibon: /* Week Three: Finance/Economy */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[Media:CSS07Part1.pdf | Patterrn Recognition and Markets I ]] 
[[Media:CSS07Part2.pdf | Patterrn Recognition and Markets II ]] 

===Doyne Farmer===
Finance/Economics 

'''- with Austin Gerig '''
[[Image:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[Image:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[Image:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Readings

2007-06-21T22:30:39Z

Gleibon: /* Week Three: Finance/Economy */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[media:CSS07Part1.pdf | Patterrn Recognition and Markets I: ]] 
[[media:CSS07Part2.pdf | Patterrn Recognition and Markets II: ]] 

===Doyne Farmer===
Finance/Economics 

'''- with Austin Gerig '''
[[Image:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[Image:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[Image:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Readings

2007-06-21T22:30:00Z

Gleibon: /* Week Three: Finance/Economy */

{{CSSS 2007 Santa Fe}}

== Week One: Modeling/Nonlinear Dynamics ==

===Liz Bradley: Non-Linear Dynamics I-IV===

'''Nonlinear Dynamics'''
* [[Media:Syllabus.pdf|Introduction to Nonlinear Dynamics]]
* [[Media:Bradley_CSSS_slides_1.pdf|Presentation Slides, 1 of 2]]
* [[Media:Bradley_CSSS_slides_2.pdf|Presentation Slides, 2 of 2]]

'''Advanced Readings'''
* [[Media:Bradley-sfi-intro.pdf|Syllabus & References: CSSS 2005]]
* [[Media:Ode.pdf|Numerical Solution of Differential Equations: Notes for CSCI3656]]
* [[Media:Ida.pdf|Time Series Analysis]]
* [http://www.cs.colorado.edu/%7Elizb/chaos-course.html CSCI 4446/6446 Course materials for Spring 2006]

===Steen Rasmussen: Artificial Life I-II===

===Alfred Hubler: Non-Linear Dynamics I-II===

'''Advanced Readings'''
* [http://www.cs.dartmouth.edu/~rockmore/CSSS2006/hubler.html Refs (from the 2006 CSSS)]
* [http://www.how-why.com/ucs2002/tutorial/ Earlier Notes]

===Scott Page: Social Sciences/Modeling I-III===

'''Lectures'''
* [http://www.cs.dartmouth.edu/~rockmore/SFISSLect1.ppt Lecture 1]
* [http://www.cs.dartmouth.edu/~rockmore/Learning.ppt Lecture 2]
* [http://www.cs.dartmouth.edu/~rockmore/SFISSCulture.ppt Lecture 3]

'''Advanced Readings'''
* [[Media:Chapter01.pdf|Chapter 1 from 'The Difference']] 
* [[Media:Signalsrevised7.pdf|'Interpreted and Generated Signals' by Lu Hong and Scott Page ]]
* [[Media:Doublecoord15.pdf|'Consistency and Coordination' by Bednar, Bramson, Jones-Rooy, and Page]]
* [[Media:BasinsreplicatorMay14.pdf |'Adjustment Dynamics and Equilibrium Selection: Why How Players Learn Matters' by Russell Golman and Scott Page]]

===Guerin, Densmore, & Thorp: Agent-Based Modeling I-II===

'''Contact Information'''
* Stephen Guerin - Stephen@Redfish.com
* Owen Densmore - Owen@Redfish.com,
* Josh Thorp - Josh@Redfish.com

'''Modeling'''
* First of all, download the NetLogo 4.0 application: [http://ccl.northwestern.edu/netlogo/ NetLogo Home] Make sure to use the Versions menu on the download page to pick 4.0beta rather than the 3.1.4 default version.
* Then read the documents: [http://ccl.northwestern.edu/netlogo/docs/ NetLogo Docs] which are also in the application under the Help menu. Note that the documentation within the Netlogo application is preferred, being 4.0, but slightly "in process" due to being beta. 

'''Homework:'''
* Run NetLogo and look at the documentation .. especially the Learning and Reference sections.
* Then run and look at the code for at least three of the Model Library examples which are under the File Menu -> Model Library.

'''Web:'''
* Several models we'll be using in the class, along with a pdf file of the slides are available on [http://backspaces.net/csss07/ http://backspaces.net/csss07/]

== Week Two: Networks/Ecology ==
===Jennifer Dunne & Neo Martinez===
Food Webs 
[[Media:Dunne_et_al_2002_Ecology_Letters.pdf|Network structure and biodiversity loss in food webs: robustness increases with connectance]] 
[[Media:Dunne_et_al_2002_PNAS.pdf |Food-web structure and network theory: The role of connectance and size]] 
[[Media:Williams_and_Martinez_2000_Nature.pdf|Simple rules yield complex food webs]] 
[[Media:Brose_et_al_2006_Ecol_Lett.pdf |Allometric scaling enhances stability in complex food webs]] 
[[Media:Williams_and_Martinez_2004_Europ_Physics_J_B.pdf |Stabilization of chaotic and non-permanent food web dynamics]] 
[[Media:Dunne_2006_Ecological_Networks_Chapter_2.pdf|The Network Structure of Food Webs]] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/foodwebs.html Food Web Refs from CSSS 2006] 
'Scaling up keystone effects from simple to complex ecological networks' Eco Letters, Brose, Berlow, Martinez 
Software and demos from Neo's talks: [http://foodwebs.org/demos] [http://foodwebs.org/index_page/wow2.html] 
[[Media:Brose et al 2006 Ecol Lett.pdf |Allometric Scaling Enhances Stability in Complex Food Webs]] 
''Slides'' 
[[Media:Dunne2006-1.pdf |Ecological Network Structure Slides Pt. 1]] 
[[Media:Dunne2006-2.pdf |Ecological Network Structure Slides Pt. 2]] 
[[Media:Dunne2006-3.pdf |Ecological Network Structure Slides Pt. 3]] 
[[Media:Dunne2006-4.pdf |Ecological Network Structure Slides Pt. 4]] 
[[Media:martinez-1.ppt |Martinez Slides Pt. 1]] 
[[Media:martinez-2-1.ppt |Martinez Slides Pt. 2]] 
[[Media:martinez-2-2.ppt |Martinez Slides Pt. 3]] 

===Mark Newman===
Networks 

Hardcopy of slides available in the CSSS office at St. Johns.

 
General Networks Refs: 
[[Media:Newman.pdf |The Structure and Function of Complex Networks]] 
[[Media:Newman2.pdf |Exploring Complex Networks]] 
Refs for Lecture 1: 
[http://arxiv.org/abs/cond-mat/0412004 Power laws, Pareto distributions and Zipf's law] (Newman) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)
 
 

===Doug Erwin===
Paleobiology 
[[Media:Erwin_2007_disparity.pdf |Erwin Supplement on Disparity: Lecture II]] 
[[Media:SFI_SSCS_2007a.ppt |Slides Lecture I]] 
[[Media:SFI_SSC_2007b.ppt |Slides Lecture II]] 
[[Media:New_cambrian_radiation_talk1.ppt |Lecture III (pt. 1)]] 
[[Media:New_cambrian_radiation_talk2.ppt |Lecture III (pt. 2)]] 
[[Media:New_cambrian_radiation_talk3.ppt |Lecture III (pt. 3)]] 
[[Media:New_cambrian_radiation_talk4.ppt |Lecture III (pt. 4)]] 

===Aaron Clauset===
Modeling of Terrorist Activity 
 
[http://www.cs.dartmouth.edu/~rockmore/Clauset_CSSS07.pdf Lecture Slides] 
[http://arxiv.org/abs/physics/0606007 On the frequency of severe terrorist events] (Clauset, Young, Gleditsch) 
[http://arxiv.org/abs/0706.1062 Power-law distributions in empirical data] (Clauset, Shalizi, Newman)

===Lauren Buckley===
Spatial Analysis 
Software, tutorials, and references are linked to the following page:
[http://www.santafe.edu/~lbuckley/SpatialAnalysis] 
[http://www.santafe.edu/~lbuckley/Downloads/Buckley_SpatialAnalysisCSSS.pdf Spatial analysis slides] 

===Cris Moore===
Computational Complexity 
[http://www.cs.dartmouth..edu/~rockmore/csss07-complexity.pdf Computational Complexity Lecture] 

Phase Transitions 
[http://www.cs.dartmouth.edu/~rockmore/csss07-phase.pdf Phase Transition Lecture] 

Quantum Computing 
[http://www.cs.dartmouth.edu/~rockmore/csss-quantum.pdf Quantum Computing Lecture] 

== Week Three: Finance/Economy ==

===Eric Smith===
[http://www.cs.dartmouth.edu/~rockmore/CSSS2006/CSSS_06_econ.pdf Background for Eric's lectures] 
[http://www.cs.dartmouth.edu/~rockmore/Econ_Thermo_CSSS_07_SF.pdf Lecture 1 - Economics/Thermodynamics] 
[http://www.cs.dartmouth.edu/~rockmore/CSSS_07_dimension.pdf Lecture 2 - Dimensional Analysis] 

===Blake LeBaron===
Finance 
[[Media:Hbook.pdf|Agent-based Computational Finance]] 
[[Media:Bldr.pdf|A Builder's Guide to Agent Based Financial Markets]] 
[[Media:Longmemory.pdf|Long-Memory in an Order-Driven Market]] 
[[Media:Agcal.pdf|Calibrating an Agent-Based Financial Market]] 
[http://www.cs.dartmouth.edu/~rockmore/sficssdistfin.nlogo Netlogo code] 
[[Media:puzzles.ppt|Difficult Empirical Facts from Finance]] 
[[Media:agentintro.ppt|What is an Agent-based Model?]] 
[[Media:netlogomkt.ppt|An Agent-Based Financial Market in Netlogo]] 
[[Media:fewtype.ppt|Few Type Agent-Based Financial Models]] 
[[Media:compmktsl.ppt|Computational Markets (many trader types)]] 

===Gregory Leibon===
[[media:CSS07Part1.pdf | Patterrn Recognition and Markets I: ]] 
[[media:CSS07Part2.pdf | Patterrn Recognition and Markets II: ]] 

===Doyne Farmer===
Finance/Economics 

'''- with Austin Gerig '''
[[Image:Farmer-Gerig.MarketEfficiency.pdf|Market Efficiency and the Long-Memory of Supply and Demand: Is Price Impact Variable and Permanent or Fixed and Temporary?]]

'''- with Eric Smith '''
[[Image:Smith-Farmer.TheoryOfMoney.pdf|A Game Theoretic Approach to the Theory of Money and Financial Institutions]]

'''- with Neda Zamani '''
[[Image:FarmerZamani.PriceImpact.pdf|Mechanical vs. Informational Components Price Iimpact]]

===Una-May O'Reilly===
'''Evolutionary Algorithms '''

[http://www.santafe.edu/events/workshops/index.php/Survey Answers to my survey of your knowledge of Evolutionary Algorithms]

'''Lectures '''
# [[Media:EAlect1.pdf| Introduction to Evolutionary Computation: GA, EP, ES]]
# [[Media:EAlect2-3.pdf| PMBGA, Genetic Programming, Research Projects in GP, development, coevolution]]

'''''Lecture Relevant Articles (will try to upload articles here):'''''

* [[Media:back-ec93.pdf|An overview of evolution algorithms for parameter optimization]] by T. Back, HP Schwefel in Evolutionary Computation, 1993.
* Check out the [http://www.genetic-programming.org/ Genetic Programming.org] website.
* Particle swarm optimization. Kennedy, J. and Eberhart, R. C. Proc. IEEE int'l conf. on neural networks Vol. IV, pp. 1942-1948. IEEE service center, Piscataway, NJ, 1995.
* Evolvable Hardware:
**[[Media:higuchi-CACM-42-4.pdf| Evolvable Hardware Chips for Industrial Applications]] by T. Higuchi and N. Kajihara.
**[[Media:scie.pdf|On Evolvable Hardware]] by T. Gordon, P.J. Bentley.

* [http://helen.cs-i.brandeis.edu/tron/ Play Tron against an evolved opponent]
* [http://www.demo.cs.brandeis.edu/tron/html/about.html Information on the Evolved Tron Player Project]

'''[http://www.santafe.edu/events/workshops/index.php/Una-May_O%27Reilly EA Software]'''

'''Background Material '''
Nothing here is a must to date. I will bring some CDs with me. One has a lot of tutorials on subtopics in the field. Check out the [http://www.sigevo.org/gecco-2007/tutorials.html GECCO 2007 website] to see the list of tutorials this year. The CD has the tutorial handouts from last year. Plus, I'll bring some GECCO proceedings along.

'''''Two obvious classics'''''

# The Origin of Species by Charles Darwin.
# Adaptation in Natural and Artificial Systems by John R. Holland.

'''''Great Reference Texts'''''
# Evolutionary Algorithms in Theory and Practice: Evolution Strategies, Evolutionary Programming, Genetic Algorithms. Author: Thomas Back. Oxford University Press, 1996.
# An Introduction to Genetic Algorithms. Author: Melanie Mitchell. MIT Press, 1996.
# Evolvable Hardware. Editors: Tetsuya Higuchi, Yong Liu, Xin Yao. Springer, 2006.
#Spatially Structured Evolutionary Algorithms. Author: Marco Tomassini. Springer 2005.
# Hierarchical Bayesian Optimization Algorithm. Author: Martin Pelikan. Springer 2005.
# Evolutionary Algorithms for Solving Multi-Objective Problems. Editors: C. Coello Coello, D. Van Veldhuizen, G.B. Lamont. Kluwer Academic Publishers, 2002.
# Genetic programming : an introduction on the automatic evolution of computer programs and its applications. Authors: Wolfgang Banzhaf, Peter Nordin, Frank Francone. Morgan Kaufmann Publishers, 1998.

== Week Four: Biology ==

===Lauren Ancel Meyers===
Network Epidemiology/Fitness Landscapes 

[http://www.cs.dartmouth.edu/~rockmore/MeyersAMS07.pdf Contact Network Epidemiology: Bond Percolation Applied to Infectious Disease Prediction and Control] 
[http://www.cs.dartmouth.edu/~rockmore/AnnualReviewsPreprint.pdf How Mutational Networks Shape Evolution] 

===Van Savage===
Allometry 

I recommend that all students look through the first couple of chapters of Reading 2. Otherwise, the students 
should choose to read from among these based on what their interests and backgrounds are. 

'''GENERAL LITERATURE ON BIOLOGICAL SCALING:''' 

0. In the Beat of a Heart by John Whitfield
(A recent popular science book about the
history of and work on scaling relationships
in biology.) 

1. Chapters 2 and 3 of On Growth and Form by D'arcy Thompson
(This is a seminal text for all mathematical biology.) 

2. Scaling: Why is Animal Size so Important by Knut Schmidt-Nielsen
(This is an extremely clear and fairly succinct explanation of scaling in biology
up to the 1980's. This book focuses on physiology.) 

3. The Ecological Implications of Body Size by R.H. Peters
(This book discusses how scaling relationships are useful
in ecology, and it has an incredibly useful set of appendices
for scaling relationships.) 

4. Size, Function, and Life History by W.A. Calder
(Another good book on scaling and ecology.) 

5. Scaling in Biology (SFI book), edited by J.H. Brown and G.B. West
(This book is a collection of articles by the leaders in the field,
and updates the literature in the scaling field, including numerous
theoretical advances of great importance.) 

'''PAPERS FOR ORIGINS OF SCALING LAWS:''' 

6. "A General Model for the Origin of Allometric
Scaling Laws in Biology", G.B. West, J.H. Brown, and B.J. Enquist
1997, Science (276) 122-126. 
(This paper is a classic and puts forward the leading theory
for an explanation of scaling relationships in biology. 
The authors use a few simple
assumptions about the structure and function of the cardiovascular
system to construct the most powerfully predictive theory to date.) 

7. V. M. Savage and G. B. West (2006). Biological scaling and physiological time: Biomedical applications. in ''Complex System Science in Biomedicine''. Ed. T. S. Deisboeck and J. Y. Kresh, New York, Kluwer Academic.
(The first part of this book chapter gives a more detailed account of the assumptions and
derivations listed in Reading 6, and it also explains how biological rates and times depend
on body temperature. This book contains several chapters by SFI faculty and alums and
should provide interesting reading to those interested in the health sciences or an introduction
to complex systems.)

'''
PAPERS ON APPLYING SCALING RELATIONSHIPS TO ECOLOGY:''' 

8. J. H. Brown, J. F. Gillooly, A. P. Allen, V. M. Savage, and G. B. West. (2004) Toward a metabolic theory of ecology (MacArthur award paper,), ''Ecology'' 85(7), 1771-1789.
(This paper lays out a modern approach to applying scaling relationships to ecological
systems.) 

9. V. M. Savage, J. F. Gillooly, J. H. Brown, G. B. West, and E. L. Charnov, (2004). Effects of
body size and temperature on population growth, ''The American Naturalist'' 163(3), 429-441.
(This paper gives one of the first examples of explicitly building up from scaling relationships
in individuals to those for populations.) 

10. "Size and Scaling of Predator-Prey Dynamics" J Weitz and SA Levin
Ecol. Lett. 2006, (9) 548-557. 
(This paper represents one of the first attempts to combine scaling relationships
for body body mass with species interactions.) 

11. "A Mechanistic Approach for Modeling Temperature-Dependent Consumer
Resource Dynamics", DA Vasseur and KS McCann AmNat 2005, (166) 184-198.
(This paper look at species interactions and how they are affected by temperature,
with possible implications for how global warming may affect biological systems.) 

'''PAPERS APPLYING SCALING RELATIONSHIPS TO TISSUE- AND CELLULAR-LEVEL:'''

12. V. M. Savage and G. B. West, Towards a quantitative, metabolic theory of mammalian
sleep, (2007) PNAS 104(3), 1051-1056.
(This paper uses scaling relationships as a tool to better understand the function of sleep and
whether it is a process for the brain or the whole body.) 

13. V. M. Savage, A.P. Allen, J. F. Gillooly, A. B. Herman, J. H. Brown, and G. B. West, (2007)
Scaling of number, size, and metabolic rate of cells with body size in mammals,
PNAS, 104(11), 4718-4713.
(This paper grapples with what the scaling relationships imply at the cellular level,
and how that might impact our understanding of cellular studies and phenomena.) 

'''BOOKS ON POWER LAWS, FRACTALS, NON-LINEAR DYNAMICS, ETC.:''' 

14. Fractals, Chaos, and Power Laws by Manfred Schroeder
(A good and playful introduction to these subjects.) 

15. Nonlinear Dynamics and Chaos by Steven Strogatz
(An extremely well written introduction to these subjects.) 

== Multi-Week ==

===Tom Carter: Information Theory===
* [http://astarte.csustan.edu/~tom/SFI-CSSS/ miscellaneous readings] -- I'll add more as time goes by . . .
* [http://astarte.csustan.edu/~tom/SFI-CSSS/2006/models/ Various RePast and NetLogo Models]
* [http://astarte.csustan.edu/~tom/classes/S06/CogS4100/ Chapters from Patricia Churchland's book "Neurophilosophy"]

CSSS 2007 Santa Fe-Schedule

2007-06-21T22:25:56Z

Gleibon: /* Week Three - FINANCE/ECONOMY */

{{CSSS 2007 Santa Fe}}
'''CSSS 2007'''
__FORCETOC__
[[Media:CSSS_2007-v2-2.pdf|Full Schedule]]

'''This schedule will be updated frequently. Check this page often to make sure you have the latest version.'''

'''All CSSS events are open only to invited participants.'''

== Week One: MODELING/NONLINEAR DYNAMICS ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 4
|-
|
|All events at SFI
|-
|9:00 a.m. - 10:15 a.m.
|Opening Remarks: Dan Rockmore
|-
|10:15 a.m. - 10:45 a.m.
|Break
|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Liz Bradley
|-
|12:00 p.m. -1:30 p.m.
|Lunch
|-
|1:30 p.m. - 2:45 p.m.
|Nonlinear Dynamics II: Liz Bradley
|-
|2:45 p.m. - 3:15 p.m.
|Break
|-
|3:15 p.m. - 4:30 p.m.
|Student introductions & breaking the ice
|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 5
|-
|9:00 a.m. - 10:15 a.m.
|
|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics III: Liz Bradley

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life I: Steen Rasmussen

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Nonlinear Dynamics IV: Liz Bradley

|-
|7:00 pm - ??
|PIZZA PARTY! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
|
| Wednesday, June 6

|-
|
|All events at SFI

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:45 p.m. - 3:00 p.m.
|Artificial Life II: Steen Rasmussen

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:30 p.m. - 4:30 p.m.
|Social Sciences/Modeling I: Scott Page

|- bgcolor="#aaaaaa" align="center"
|
| Thursday, June 7

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling I: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Social Sciences/Modeling II: Scott Page

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Social Sciences/Modeling III: Scott Page

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[Discussion of Finite State Machines]], 2nd Floor Senior Seminar Room

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 8

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling II: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics II: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
| Information theory, Measuring Systems, etc.: Tom Carter

|-
|1:00 p.m.- 3:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 1:00 Lab Signup|signup]]

|-
|3:00 p.m. - 5:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 3:00 Lab Signup|signup]]

|-
|5:00 p.m - 8:00 p.m.
|Calypso dinner at SFI

|}

== Week Two - NETWORKS/ECOLOGY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 11

|-
|9:00 a.m. - 10:15 a.m.
|Power Laws: Mark Newman

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Networks I: Mark Newman

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs I: Jennifer Dunne

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Paleobiology I: Doug Erwin

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[ Matlab tutorial ]]

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 12

|-
|8:30 a.m. - 10:30 a.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 8:30 Lab Signup|signup]]

|-
|9:15 a.m. - 10:15 a.m.
|Tutorial:[[Consciousness and/or visual processing]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Paleobiology II: Doug Erwin

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Paleobiology III: Doug Erwin

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Networks II: Mark Newman

|-
|4:30 p.m. - 6:30 p.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 4:30 Lab Signup|signup]]

|-
|7.00pm - 7:50pm
|Tutorial:[[Eigenvectors and Eigenvalues]](new but finalised time!!)

|-
|8:00-??
|CINEMA NIGHT! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 13

|-
|
|All afternoon events at SFI

|-
|9:00 a.m. - 10:00 a.m.
|Tutorial: [[Cellular Automata]] (before leaving for SFI)

|-
|10:15 a.m. - 11:15 a.m.
| Information theory, Measuring Systems, etc. II: Tom Carter (before leaving for SFI)

|-
|12:00 p.m. -1:30 p.m.
|Lunch (at SFI)

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs II: Jennifer Dunne

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Networks III: Mark Newman

|-
|7:00 p.m. - 8:00 p.m.
|'''Tutorial on "Closure Under Inversion" ''shifted'' to Tuesday, June 19 at 4:45 p.m.'''

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 14

|-
|9:00 a.m. - 10:15 a.m.
|Food Webs I: Neo Martinez

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Food Webs II: Neo Martinez

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Modeling I: Aaron Clauset

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Spatial Ecology: Lauren Buckley

|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Agent-Based Modeling: Non-Technical Overview and Applications]] [[Aaron Frank]]

|-
|7:00 p.m. - 8:00 p.m.
| Tutorial: [[Stochastic search strategies and animal foraging]] Frederic Bartumeus (after dinner)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 15

|-
|9:00 a.m. - 10:15 a.m.
|Computational Complexity I: Cris Moore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Computational Complexity II: Phase Transitions Cris Moore

|-
|1:00 p.m. - 2:00 p.m.
|Tutorial: [[Artificial Neural Networks]]

|-
|2:00 p.m. - 4:00 p.m.
|Tutorial: [[Applications of non-commutative harmonic analysis]] (Risi)
|}

== Week Three - FINANCE/ECONOMY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 18
|-
|
|All events at SFI

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Eric Smith

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance/Economics II: Eric Smith

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance I: Blake LeBaron

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Computational Complexity III: Quantum Computing Cris Moore

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[Intro to Game Theory]] (Simon and Will B.)

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 19

|-
|9:00 a.m. - 10:15 a.m.
| [[media:CSS07Part1.pdf | Patterrn Recognition and Markets IA: ]]Greg Leibon

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Patterrn Recognition and Markets IB: Greg Leibon

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance II: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing I: Una-May O'Reilly

|-
|4:45 p.m. - 5:45 p.m.
| Tutorial: [[ Closure Under Inversion]] Saleha Habibullah (in the Great Hall)

|-
|7:00 - ??
|PIZZA PARTY II (@ St. Johns)

|-
|8:15 p.m. - 9:30 p.m.
| Eine kleine nachtmusik [some art and music (not Mozart :-) with Tom in the Great Hall]

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 20

|-
|9:15 a.m. - 10:30 a.m.
| Information theory, measuring systems, etc. III: Tom Carter

|-
|10:45 a.m. - 12:00 p.m.
|Tutorial: [[Evolutionary Game Theory]] Jorge Gallego

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance III: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
| [[media:CSS07Part2.pdf | Patterrn Recognition and Markets II: ]] Greg Leibon
|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Simulating and analyzing biochemical networks with COPASI]] - [[Juergen Pahle]]

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[UML for Complex Systems]] - [[Brian Lawler]]

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 21

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance IV: Blake LeBaron

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Evolutionary Computing II: Una-May O'Reilly

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing III: Una-May O'Reilly

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[R Tutorial]] Rafal Raciborski

|-
|8:30 p.m. - Onward
|Cultural Night! (in the Great Hall)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 22

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics II: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Evolution I: David Krakauer

|-
|2:00 p.m. - 3:15 p.m.
| Tutorial: [[Introductory Graph Theory and simple algorithms]] (Amitabh Trehan)
|}

== Week Four - BIOLOGY/BBQ! ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 25

|-
|9:00 a.m. - 10:15 a.m.
|Allometry I: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology I: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 26

|-
|9:00 a.m. - 10:15 a.m.
|Allometry II: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology II: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 27

|-
|
|All events at SFI

|-
|1:30 p.m. - 2:45 p.m.
|Fitness Landscapes: Lauren Ancel Meyers

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Allometry III: Van Savage

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 28

|-
|9:30 a.m. - 11:00 a.m.
|Mathematica 6 intro @ SFI [[http://www.santafe.edu/education/application/mathematica07 Link]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|OPEN

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life for the evolution towards Artificial Intelligence: [http://virgil.gr Virgil Griffith]

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 29: FINAL POSTER DAY

|}

== Lecturers ==

'''Week 1:'''

Liz Bradley (Nonlinear Dynamics) 
Stephen Guerin/Owen Densmore (Agent Based Modeling) 
Alfred Hubler (Nonlinear Dynamics) 
Scott Page (Social Sciences/Modeling) 
Steen Rasmussen (Artificial Life) 

'''Week 2:'''

Mark Newman (Networks, Power Laws) 
Cris Moore (Computational Complexity) 
Jennifer Dunne (Food Webs) 
Neo Martinez (Food Webs) 
Doug Erwin (Paleobiology) 
Aaron Clauset (Modeling) 

'''Week 3:'''

Eric Smith (Finance/Economics) 
Doyne Farmer (Finance/Economics) 
Blake Lebaron (Finance) 
Una-May O’Reilly (Evolutionary Computing) 
Greg Leibon (Pattern Recognition in Market Data) 
Cris Moore (Statistical Mechanics) 
David Krakauer (Evolution) 

'''Week 4:'''

Van Savage (Allometry) 
Lauren Ancel-Myers (Networks, Evolution, Epidemiology) 

'''Projects'''

== Cafeteria Meal Schedule ==
Breakfast: Monday-Saturday 7:30am - 9:30am 
Continental Breakfast: Monday-Saturday 9:30am - 10am 
Lunch: Monday-Saturday 11:30am - 1:30pm 
Dinner: Monday-Sunday 5:00 pm - 6:30pm 
Brunch: Sunday 10:30am - 1:30pm

CSSS 2007 Santa Fe-Schedule

2007-06-21T22:24:48Z

Gleibon: /* Week Three - FINANCE/ECONOMY */

{{CSSS 2007 Santa Fe}}
'''CSSS 2007'''
__FORCETOC__
[[Media:CSSS_2007-v2-2.pdf|Full Schedule]]

'''This schedule will be updated frequently. Check this page often to make sure you have the latest version.'''

'''All CSSS events are open only to invited participants.'''

== Week One: MODELING/NONLINEAR DYNAMICS ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 4
|-
|
|All events at SFI
|-
|9:00 a.m. - 10:15 a.m.
|Opening Remarks: Dan Rockmore
|-
|10:15 a.m. - 10:45 a.m.
|Break
|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Liz Bradley
|-
|12:00 p.m. -1:30 p.m.
|Lunch
|-
|1:30 p.m. - 2:45 p.m.
|Nonlinear Dynamics II: Liz Bradley
|-
|2:45 p.m. - 3:15 p.m.
|Break
|-
|3:15 p.m. - 4:30 p.m.
|Student introductions & breaking the ice
|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 5
|-
|9:00 a.m. - 10:15 a.m.
|
|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics III: Liz Bradley

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life I: Steen Rasmussen

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Nonlinear Dynamics IV: Liz Bradley

|-
|7:00 pm - ??
|PIZZA PARTY! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
|
| Wednesday, June 6

|-
|
|All events at SFI

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:45 p.m. - 3:00 p.m.
|Artificial Life II: Steen Rasmussen

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:30 p.m. - 4:30 p.m.
|Social Sciences/Modeling I: Scott Page

|- bgcolor="#aaaaaa" align="center"
|
| Thursday, June 7

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling I: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Social Sciences/Modeling II: Scott Page

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Social Sciences/Modeling III: Scott Page

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[Discussion of Finite State Machines]], 2nd Floor Senior Seminar Room

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 8

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling II: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics II: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
| Information theory, Measuring Systems, etc.: Tom Carter

|-
|1:00 p.m.- 3:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 1:00 Lab Signup|signup]]

|-
|3:00 p.m. - 5:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 3:00 Lab Signup|signup]]

|-
|5:00 p.m - 8:00 p.m.
|Calypso dinner at SFI

|}

== Week Two - NETWORKS/ECOLOGY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 11

|-
|9:00 a.m. - 10:15 a.m.
|Power Laws: Mark Newman

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Networks I: Mark Newman

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs I: Jennifer Dunne

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Paleobiology I: Doug Erwin

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[ Matlab tutorial ]]

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 12

|-
|8:30 a.m. - 10:30 a.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 8:30 Lab Signup|signup]]

|-
|9:15 a.m. - 10:15 a.m.
|Tutorial:[[Consciousness and/or visual processing]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Paleobiology II: Doug Erwin

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Paleobiology III: Doug Erwin

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Networks II: Mark Newman

|-
|4:30 p.m. - 6:30 p.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 4:30 Lab Signup|signup]]

|-
|7.00pm - 7:50pm
|Tutorial:[[Eigenvectors and Eigenvalues]](new but finalised time!!)

|-
|8:00-??
|CINEMA NIGHT! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 13

|-
|
|All afternoon events at SFI

|-
|9:00 a.m. - 10:00 a.m.
|Tutorial: [[Cellular Automata]] (before leaving for SFI)

|-
|10:15 a.m. - 11:15 a.m.
| Information theory, Measuring Systems, etc. II: Tom Carter (before leaving for SFI)

|-
|12:00 p.m. -1:30 p.m.
|Lunch (at SFI)

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs II: Jennifer Dunne

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Networks III: Mark Newman

|-
|7:00 p.m. - 8:00 p.m.
|'''Tutorial on "Closure Under Inversion" ''shifted'' to Tuesday, June 19 at 4:45 p.m.'''

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 14

|-
|9:00 a.m. - 10:15 a.m.
|Food Webs I: Neo Martinez

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Food Webs II: Neo Martinez

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Modeling I: Aaron Clauset

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Spatial Ecology: Lauren Buckley

|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Agent-Based Modeling: Non-Technical Overview and Applications]] [[Aaron Frank]]

|-
|7:00 p.m. - 8:00 p.m.
| Tutorial: [[Stochastic search strategies and animal foraging]] Frederic Bartumeus (after dinner)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 15

|-
|9:00 a.m. - 10:15 a.m.
|Computational Complexity I: Cris Moore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Computational Complexity II: Phase Transitions Cris Moore

|-
|1:00 p.m. - 2:00 p.m.
|Tutorial: [[Artificial Neural Networks]]

|-
|2:00 p.m. - 4:00 p.m.
|Tutorial: [[Applications of non-commutative harmonic analysis]] (Risi)
|}

== Week Three - FINANCE/ECONOMY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 18
|-
|
|All events at SFI

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Eric Smith

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance/Economics II: Eric Smith

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance I: Blake LeBaron

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Computational Complexity III: Quantum Computing Cris Moore

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[Intro to Game Theory]] (Simon and Will B.)

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 19

|-
|9:00 a.m. - 10:15 a.m.
| [[media:CSS07Part1.pdf | Patterrn Recognition and Markets I: ]]Greg Leibon

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Patterrn Recognition and Markets IB: Greg Leibon

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance II: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing I: Una-May O'Reilly

|-
|4:45 p.m. - 5:45 p.m.
| Tutorial: [[ Closure Under Inversion]] Saleha Habibullah (in the Great Hall)

|-
|7:00 - ??
|PIZZA PARTY II (@ St. Johns)

|-
|8:15 p.m. - 9:30 p.m.
| Eine kleine nachtmusik [some art and music (not Mozart :-) with Tom in the Great Hall]

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 20

|-
|9:15 a.m. - 10:30 a.m.
| Information theory, measuring systems, etc. III: Tom Carter

|-
|10:45 a.m. - 12:00 p.m.
|Tutorial: [[Evolutionary Game Theory]] Jorge Gallego

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance III: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
| [[media:CSS07Part2.pdf | Patterrn Recognition and Markets II: ]] Greg Leibon:
|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Simulating and analyzing biochemical networks with COPASI]] - [[Juergen Pahle]]

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[UML for Complex Systems]] - [[Brian Lawler]]

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 21

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance IV: Blake LeBaron

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Evolutionary Computing II: Una-May O'Reilly

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing III: Una-May O'Reilly

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[R Tutorial]] Rafal Raciborski

|-
|8:30 p.m. - Onward
|Cultural Night! (in the Great Hall)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 22

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics II: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Evolution I: David Krakauer

|-
|2:00 p.m. - 3:15 p.m.
| Tutorial: [[Introductory Graph Theory and simple algorithms]] (Amitabh Trehan)
|}

== Week Four - BIOLOGY/BBQ! ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 25

|-
|9:00 a.m. - 10:15 a.m.
|Allometry I: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology I: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 26

|-
|9:00 a.m. - 10:15 a.m.
|Allometry II: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology II: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 27

|-
|
|All events at SFI

|-
|1:30 p.m. - 2:45 p.m.
|Fitness Landscapes: Lauren Ancel Meyers

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Allometry III: Van Savage

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 28

|-
|9:30 a.m. - 11:00 a.m.
|Mathematica 6 intro @ SFI [[http://www.santafe.edu/education/application/mathematica07 Link]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|OPEN

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life for the evolution towards Artificial Intelligence: [http://virgil.gr Virgil Griffith]

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 29: FINAL POSTER DAY

|}

== Lecturers ==

'''Week 1:'''

Liz Bradley (Nonlinear Dynamics) 
Stephen Guerin/Owen Densmore (Agent Based Modeling) 
Alfred Hubler (Nonlinear Dynamics) 
Scott Page (Social Sciences/Modeling) 
Steen Rasmussen (Artificial Life) 

'''Week 2:'''

Mark Newman (Networks, Power Laws) 
Cris Moore (Computational Complexity) 
Jennifer Dunne (Food Webs) 
Neo Martinez (Food Webs) 
Doug Erwin (Paleobiology) 
Aaron Clauset (Modeling) 

'''Week 3:'''

Eric Smith (Finance/Economics) 
Doyne Farmer (Finance/Economics) 
Blake Lebaron (Finance) 
Una-May O’Reilly (Evolutionary Computing) 
Greg Leibon (Pattern Recognition in Market Data) 
Cris Moore (Statistical Mechanics) 
David Krakauer (Evolution) 

'''Week 4:'''

Van Savage (Allometry) 
Lauren Ancel-Myers (Networks, Evolution, Epidemiology) 

'''Projects'''

== Cafeteria Meal Schedule ==
Breakfast: Monday-Saturday 7:30am - 9:30am 
Continental Breakfast: Monday-Saturday 9:30am - 10am 
Lunch: Monday-Saturday 11:30am - 1:30pm 
Dinner: Monday-Sunday 5:00 pm - 6:30pm 
Brunch: Sunday 10:30am - 1:30pm

File:CSS07Part2.pdf

2007-06-21T22:23:48Z

Gleibon:

CSSS 2007 Santa Fe-Schedule

2007-06-21T22:22:18Z

Gleibon: /* Week Three - FINANCE/ECONOMY */

{{CSSS 2007 Santa Fe}}
'''CSSS 2007'''
__FORCETOC__
[[Media:CSSS_2007-v2-2.pdf|Full Schedule]]

'''This schedule will be updated frequently. Check this page often to make sure you have the latest version.'''

'''All CSSS events are open only to invited participants.'''

== Week One: MODELING/NONLINEAR DYNAMICS ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 4
|-
|
|All events at SFI
|-
|9:00 a.m. - 10:15 a.m.
|Opening Remarks: Dan Rockmore
|-
|10:15 a.m. - 10:45 a.m.
|Break
|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Liz Bradley
|-
|12:00 p.m. -1:30 p.m.
|Lunch
|-
|1:30 p.m. - 2:45 p.m.
|Nonlinear Dynamics II: Liz Bradley
|-
|2:45 p.m. - 3:15 p.m.
|Break
|-
|3:15 p.m. - 4:30 p.m.
|Student introductions & breaking the ice
|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 5
|-
|9:00 a.m. - 10:15 a.m.
|
|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics III: Liz Bradley

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life I: Steen Rasmussen

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Nonlinear Dynamics IV: Liz Bradley

|-
|7:00 pm - ??
|PIZZA PARTY! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
|
| Wednesday, June 6

|-
|
|All events at SFI

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:45 p.m. - 3:00 p.m.
|Artificial Life II: Steen Rasmussen

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:30 p.m. - 4:30 p.m.
|Social Sciences/Modeling I: Scott Page

|- bgcolor="#aaaaaa" align="center"
|
| Thursday, June 7

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling I: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Social Sciences/Modeling II: Scott Page

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Social Sciences/Modeling III: Scott Page

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[Discussion of Finite State Machines]], 2nd Floor Senior Seminar Room

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 8

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling II: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics II: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
| Information theory, Measuring Systems, etc.: Tom Carter

|-
|1:00 p.m.- 3:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 1:00 Lab Signup|signup]]

|-
|3:00 p.m. - 5:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 3:00 Lab Signup|signup]]

|-
|5:00 p.m - 8:00 p.m.
|Calypso dinner at SFI

|}

== Week Two - NETWORKS/ECOLOGY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 11

|-
|9:00 a.m. - 10:15 a.m.
|Power Laws: Mark Newman

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Networks I: Mark Newman

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs I: Jennifer Dunne

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Paleobiology I: Doug Erwin

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[ Matlab tutorial ]]

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 12

|-
|8:30 a.m. - 10:30 a.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 8:30 Lab Signup|signup]]

|-
|9:15 a.m. - 10:15 a.m.
|Tutorial:[[Consciousness and/or visual processing]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Paleobiology II: Doug Erwin

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Paleobiology III: Doug Erwin

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Networks II: Mark Newman

|-
|4:30 p.m. - 6:30 p.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 4:30 Lab Signup|signup]]

|-
|7.00pm - 7:50pm
|Tutorial:[[Eigenvectors and Eigenvalues]](new but finalised time!!)

|-
|8:00-??
|CINEMA NIGHT! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 13

|-
|
|All afternoon events at SFI

|-
|9:00 a.m. - 10:00 a.m.
|Tutorial: [[Cellular Automata]] (before leaving for SFI)

|-
|10:15 a.m. - 11:15 a.m.
| Information theory, Measuring Systems, etc. II: Tom Carter (before leaving for SFI)

|-
|12:00 p.m. -1:30 p.m.
|Lunch (at SFI)

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs II: Jennifer Dunne

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Networks III: Mark Newman

|-
|7:00 p.m. - 8:00 p.m.
|'''Tutorial on "Closure Under Inversion" ''shifted'' to Tuesday, June 19 at 4:45 p.m.'''

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 14

|-
|9:00 a.m. - 10:15 a.m.
|Food Webs I: Neo Martinez

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Food Webs II: Neo Martinez

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Modeling I: Aaron Clauset

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Spatial Ecology: Lauren Buckley

|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Agent-Based Modeling: Non-Technical Overview and Applications]] [[Aaron Frank]]

|-
|7:00 p.m. - 8:00 p.m.
| Tutorial: [[Stochastic search strategies and animal foraging]] Frederic Bartumeus (after dinner)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 15

|-
|9:00 a.m. - 10:15 a.m.
|Computational Complexity I: Cris Moore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Computational Complexity II: Phase Transitions Cris Moore

|-
|1:00 p.m. - 2:00 p.m.
|Tutorial: [[Artificial Neural Networks]]

|-
|2:00 p.m. - 4:00 p.m.
|Tutorial: [[Applications of non-commutative harmonic analysis]] (Risi)
|}

== Week Three - FINANCE/ECONOMY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 18
|-
|
|All events at SFI

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Eric Smith

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance/Economics II: Eric Smith

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance I: Blake LeBaron

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Computational Complexity III: Quantum Computing Cris Moore

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[Intro to Game Theory]] (Simon and Will B.)

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 19

|-
|9:00 a.m. - 10:15 a.m.
| [[media:CSS07Part1.pdf | Patterrn Recognition and Markets I: ]]Greg Leibon

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Patterrn Recognition and Markets II: Greg Leibon

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance II: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing I: Una-May O'Reilly

|-
|4:45 p.m. - 5:45 p.m.
| Tutorial: [[ Closure Under Inversion]] Saleha Habibullah (in the Great Hall)

|-
|7:00 - ??
|PIZZA PARTY II (@ St. Johns)

|-
|8:15 p.m. - 9:30 p.m.
| Eine kleine nachtmusik [some art and music (not Mozart :-) with Tom in the Great Hall]

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 20

|-
|9:15 a.m. - 10:30 a.m.
| Information theory, measuring systems, etc. III: Tom Carter

|-
|10:45 a.m. - 12:00 p.m.
|Tutorial: [[Evolutionary Game Theory]] Jorge Gallego

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance III: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Pattern Recognition and Markets III: Greg Leibon
|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Simulating and analyzing biochemical networks with COPASI]] - [[Juergen Pahle]]

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[UML for Complex Systems]] - [[Brian Lawler]]

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 21

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance IV: Blake LeBaron

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Evolutionary Computing II: Una-May O'Reilly

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing III: Una-May O'Reilly

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[R Tutorial]] Rafal Raciborski

|-
|8:30 p.m. - Onward
|Cultural Night! (in the Great Hall)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 22

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics II: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Evolution I: David Krakauer

|-
|2:00 p.m. - 3:15 p.m.
| Tutorial: [[Introductory Graph Theory and simple algorithms]] (Amitabh Trehan)
|}

== Week Four - BIOLOGY/BBQ! ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 25

|-
|9:00 a.m. - 10:15 a.m.
|Allometry I: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology I: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 26

|-
|9:00 a.m. - 10:15 a.m.
|Allometry II: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology II: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 27

|-
|
|All events at SFI

|-
|1:30 p.m. - 2:45 p.m.
|Fitness Landscapes: Lauren Ancel Meyers

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Allometry III: Van Savage

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 28

|-
|9:30 a.m. - 11:00 a.m.
|Mathematica 6 intro @ SFI [[http://www.santafe.edu/education/application/mathematica07 Link]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|OPEN

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life for the evolution towards Artificial Intelligence: [http://virgil.gr Virgil Griffith]

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 29: FINAL POSTER DAY

|}

== Lecturers ==

'''Week 1:'''

Liz Bradley (Nonlinear Dynamics) 
Stephen Guerin/Owen Densmore (Agent Based Modeling) 
Alfred Hubler (Nonlinear Dynamics) 
Scott Page (Social Sciences/Modeling) 
Steen Rasmussen (Artificial Life) 

'''Week 2:'''

Mark Newman (Networks, Power Laws) 
Cris Moore (Computational Complexity) 
Jennifer Dunne (Food Webs) 
Neo Martinez (Food Webs) 
Doug Erwin (Paleobiology) 
Aaron Clauset (Modeling) 

'''Week 3:'''

Eric Smith (Finance/Economics) 
Doyne Farmer (Finance/Economics) 
Blake Lebaron (Finance) 
Una-May O’Reilly (Evolutionary Computing) 
Greg Leibon (Pattern Recognition in Market Data) 
Cris Moore (Statistical Mechanics) 
David Krakauer (Evolution) 

'''Week 4:'''

Van Savage (Allometry) 
Lauren Ancel-Myers (Networks, Evolution, Epidemiology) 

'''Projects'''

== Cafeteria Meal Schedule ==
Breakfast: Monday-Saturday 7:30am - 9:30am 
Continental Breakfast: Monday-Saturday 9:30am - 10am 
Lunch: Monday-Saturday 11:30am - 1:30pm 
Dinner: Monday-Sunday 5:00 pm - 6:30pm 
Brunch: Sunday 10:30am - 1:30pm

CSSS 2007 Santa Fe-Schedule

2007-06-21T22:21:33Z

Gleibon: /* Week Three - FINANCE/ECONOMY */

{{CSSS 2007 Santa Fe}}
'''CSSS 2007'''
__FORCETOC__
[[Media:CSSS_2007-v2-2.pdf|Full Schedule]]

'''This schedule will be updated frequently. Check this page often to make sure you have the latest version.'''

'''All CSSS events are open only to invited participants.'''

== Week One: MODELING/NONLINEAR DYNAMICS ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 4
|-
|
|All events at SFI
|-
|9:00 a.m. - 10:15 a.m.
|Opening Remarks: Dan Rockmore
|-
|10:15 a.m. - 10:45 a.m.
|Break
|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Liz Bradley
|-
|12:00 p.m. -1:30 p.m.
|Lunch
|-
|1:30 p.m. - 2:45 p.m.
|Nonlinear Dynamics II: Liz Bradley
|-
|2:45 p.m. - 3:15 p.m.
|Break
|-
|3:15 p.m. - 4:30 p.m.
|Student introductions & breaking the ice
|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 5
|-
|9:00 a.m. - 10:15 a.m.
|
|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics III: Liz Bradley

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life I: Steen Rasmussen

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Nonlinear Dynamics IV: Liz Bradley

|-
|7:00 pm - ??
|PIZZA PARTY! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
|
| Wednesday, June 6

|-
|
|All events at SFI

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:45 p.m. - 3:00 p.m.
|Artificial Life II: Steen Rasmussen

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:30 p.m. - 4:30 p.m.
|Social Sciences/Modeling I: Scott Page

|- bgcolor="#aaaaaa" align="center"
|
| Thursday, June 7

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling I: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Social Sciences/Modeling II: Scott Page

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Social Sciences/Modeling III: Scott Page

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[Discussion of Finite State Machines]], 2nd Floor Senior Seminar Room

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 8

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling II: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics II: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
| Information theory, Measuring Systems, etc.: Tom Carter

|-
|1:00 p.m.- 3:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 1:00 Lab Signup|signup]]

|-
|3:00 p.m. - 5:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 3:00 Lab Signup|signup]]

|-
|5:00 p.m - 8:00 p.m.
|Calypso dinner at SFI

|}

== Week Two - NETWORKS/ECOLOGY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 11

|-
|9:00 a.m. - 10:15 a.m.
|Power Laws: Mark Newman

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Networks I: Mark Newman

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs I: Jennifer Dunne

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Paleobiology I: Doug Erwin

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[ Matlab tutorial ]]

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 12

|-
|8:30 a.m. - 10:30 a.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 8:30 Lab Signup|signup]]

|-
|9:15 a.m. - 10:15 a.m.
|Tutorial:[[Consciousness and/or visual processing]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Paleobiology II: Doug Erwin

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Paleobiology III: Doug Erwin

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Networks II: Mark Newman

|-
|4:30 p.m. - 6:30 p.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 4:30 Lab Signup|signup]]

|-
|7.00pm - 7:50pm
|Tutorial:[[Eigenvectors and Eigenvalues]](new but finalised time!!)

|-
|8:00-??
|CINEMA NIGHT! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 13

|-
|
|All afternoon events at SFI

|-
|9:00 a.m. - 10:00 a.m.
|Tutorial: [[Cellular Automata]] (before leaving for SFI)

|-
|10:15 a.m. - 11:15 a.m.
| Information theory, Measuring Systems, etc. II: Tom Carter (before leaving for SFI)

|-
|12:00 p.m. -1:30 p.m.
|Lunch (at SFI)

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs II: Jennifer Dunne

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Networks III: Mark Newman

|-
|7:00 p.m. - 8:00 p.m.
|'''Tutorial on "Closure Under Inversion" ''shifted'' to Tuesday, June 19 at 4:45 p.m.'''

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 14

|-
|9:00 a.m. - 10:15 a.m.
|Food Webs I: Neo Martinez

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Food Webs II: Neo Martinez

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Modeling I: Aaron Clauset

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Spatial Ecology: Lauren Buckley

|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Agent-Based Modeling: Non-Technical Overview and Applications]] [[Aaron Frank]]

|-
|7:00 p.m. - 8:00 p.m.
| Tutorial: [[Stochastic search strategies and animal foraging]] Frederic Bartumeus (after dinner)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 15

|-
|9:00 a.m. - 10:15 a.m.
|Computational Complexity I: Cris Moore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Computational Complexity II: Phase Transitions Cris Moore

|-
|1:00 p.m. - 2:00 p.m.
|Tutorial: [[Artificial Neural Networks]]

|-
|2:00 p.m. - 4:00 p.m.
|Tutorial: [[Applications of non-commutative harmonic analysis]] (Risi)
|}

== Week Three - FINANCE/ECONOMY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 18
|-
|
|All events at SFI

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Eric Smith

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance/Economics II: Eric Smith

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance I: Blake LeBaron

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Computational Complexity III: Quantum Computing Cris Moore

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[Intro to Game Theory]] (Simon and Will B.)

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 19

|-
|9:00 a.m. - 10:15 a.m.
[[media:CSS07Part1.pdf | Patterrn Recognition and Markets I: ]]Greg Leibon

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Patterrn Recognition and Markets II: Greg Leibon

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance II: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing I: Una-May O'Reilly

|-
|4:45 p.m. - 5:45 p.m.
| Tutorial: [[ Closure Under Inversion]] Saleha Habibullah (in the Great Hall)

|-
|7:00 - ??
|PIZZA PARTY II (@ St. Johns)

|-
|8:15 p.m. - 9:30 p.m.
| Eine kleine nachtmusik [some art and music (not Mozart :-) with Tom in the Great Hall]

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 20

|-
|9:15 a.m. - 10:30 a.m.
| Information theory, measuring systems, etc. III: Tom Carter

|-
|10:45 a.m. - 12:00 p.m.
|Tutorial: [[Evolutionary Game Theory]] Jorge Gallego

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance III: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Pattern Recognition and Markets III: Greg Leibon
|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Simulating and analyzing biochemical networks with COPASI]] - [[Juergen Pahle]]

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[UML for Complex Systems]] - [[Brian Lawler]]

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 21

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance IV: Blake LeBaron

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Evolutionary Computing II: Una-May O'Reilly

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing III: Una-May O'Reilly

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[R Tutorial]] Rafal Raciborski

|-
|8:30 p.m. - Onward
|Cultural Night! (in the Great Hall)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 22

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics II: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Evolution I: David Krakauer

|-
|2:00 p.m. - 3:15 p.m.
| Tutorial: [[Introductory Graph Theory and simple algorithms]] (Amitabh Trehan)
|}

== Week Four - BIOLOGY/BBQ! ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 25

|-
|9:00 a.m. - 10:15 a.m.
|Allometry I: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology I: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 26

|-
|9:00 a.m. - 10:15 a.m.
|Allometry II: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology II: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 27

|-
|
|All events at SFI

|-
|1:30 p.m. - 2:45 p.m.
|Fitness Landscapes: Lauren Ancel Meyers

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Allometry III: Van Savage

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 28

|-
|9:30 a.m. - 11:00 a.m.
|Mathematica 6 intro @ SFI [[http://www.santafe.edu/education/application/mathematica07 Link]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|OPEN

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life for the evolution towards Artificial Intelligence: [http://virgil.gr Virgil Griffith]

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 29: FINAL POSTER DAY

|}

== Lecturers ==

'''Week 1:'''

Liz Bradley (Nonlinear Dynamics) 
Stephen Guerin/Owen Densmore (Agent Based Modeling) 
Alfred Hubler (Nonlinear Dynamics) 
Scott Page (Social Sciences/Modeling) 
Steen Rasmussen (Artificial Life) 

'''Week 2:'''

Mark Newman (Networks, Power Laws) 
Cris Moore (Computational Complexity) 
Jennifer Dunne (Food Webs) 
Neo Martinez (Food Webs) 
Doug Erwin (Paleobiology) 
Aaron Clauset (Modeling) 

'''Week 3:'''

Eric Smith (Finance/Economics) 
Doyne Farmer (Finance/Economics) 
Blake Lebaron (Finance) 
Una-May O’Reilly (Evolutionary Computing) 
Greg Leibon (Pattern Recognition in Market Data) 
Cris Moore (Statistical Mechanics) 
David Krakauer (Evolution) 

'''Week 4:'''

Van Savage (Allometry) 
Lauren Ancel-Myers (Networks, Evolution, Epidemiology) 

'''Projects'''

== Cafeteria Meal Schedule ==
Breakfast: Monday-Saturday 7:30am - 9:30am 
Continental Breakfast: Monday-Saturday 9:30am - 10am 
Lunch: Monday-Saturday 11:30am - 1:30pm 
Dinner: Monday-Sunday 5:00 pm - 6:30pm 
Brunch: Sunday 10:30am - 1:30pm

CSSS 2007 Santa Fe-Schedule

2007-06-21T22:21:14Z

Gleibon: /* Week Three - FINANCE/ECONOMY */

{{CSSS 2007 Santa Fe}}
'''CSSS 2007'''
__FORCETOC__
[[Media:CSSS_2007-v2-2.pdf|Full Schedule]]

'''This schedule will be updated frequently. Check this page often to make sure you have the latest version.'''

'''All CSSS events are open only to invited participants.'''

== Week One: MODELING/NONLINEAR DYNAMICS ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 4
|-
|
|All events at SFI
|-
|9:00 a.m. - 10:15 a.m.
|Opening Remarks: Dan Rockmore
|-
|10:15 a.m. - 10:45 a.m.
|Break
|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Liz Bradley
|-
|12:00 p.m. -1:30 p.m.
|Lunch
|-
|1:30 p.m. - 2:45 p.m.
|Nonlinear Dynamics II: Liz Bradley
|-
|2:45 p.m. - 3:15 p.m.
|Break
|-
|3:15 p.m. - 4:30 p.m.
|Student introductions & breaking the ice
|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 5
|-
|9:00 a.m. - 10:15 a.m.
|
|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics III: Liz Bradley

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life I: Steen Rasmussen

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Nonlinear Dynamics IV: Liz Bradley

|-
|7:00 pm - ??
|PIZZA PARTY! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
|
| Wednesday, June 6

|-
|
|All events at SFI

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:45 p.m. - 3:00 p.m.
|Artificial Life II: Steen Rasmussen

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:30 p.m. - 4:30 p.m.
|Social Sciences/Modeling I: Scott Page

|- bgcolor="#aaaaaa" align="center"
|
| Thursday, June 7

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling I: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Social Sciences/Modeling II: Scott Page

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Social Sciences/Modeling III: Scott Page

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[Discussion of Finite State Machines]], 2nd Floor Senior Seminar Room

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 8

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling II: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics II: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
| Information theory, Measuring Systems, etc.: Tom Carter

|-
|1:00 p.m.- 3:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 1:00 Lab Signup|signup]]

|-
|3:00 p.m. - 5:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 3:00 Lab Signup|signup]]

|-
|5:00 p.m - 8:00 p.m.
|Calypso dinner at SFI

|}

== Week Two - NETWORKS/ECOLOGY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 11

|-
|9:00 a.m. - 10:15 a.m.
|Power Laws: Mark Newman

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Networks I: Mark Newman

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs I: Jennifer Dunne

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Paleobiology I: Doug Erwin

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[ Matlab tutorial ]]

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 12

|-
|8:30 a.m. - 10:30 a.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 8:30 Lab Signup|signup]]

|-
|9:15 a.m. - 10:15 a.m.
|Tutorial:[[Consciousness and/or visual processing]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Paleobiology II: Doug Erwin

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Paleobiology III: Doug Erwin

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Networks II: Mark Newman

|-
|4:30 p.m. - 6:30 p.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 4:30 Lab Signup|signup]]

|-
|7.00pm - 7:50pm
|Tutorial:[[Eigenvectors and Eigenvalues]](new but finalised time!!)

|-
|8:00-??
|CINEMA NIGHT! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 13

|-
|
|All afternoon events at SFI

|-
|9:00 a.m. - 10:00 a.m.
|Tutorial: [[Cellular Automata]] (before leaving for SFI)

|-
|10:15 a.m. - 11:15 a.m.
| Information theory, Measuring Systems, etc. II: Tom Carter (before leaving for SFI)

|-
|12:00 p.m. -1:30 p.m.
|Lunch (at SFI)

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs II: Jennifer Dunne

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Networks III: Mark Newman

|-
|7:00 p.m. - 8:00 p.m.
|'''Tutorial on "Closure Under Inversion" ''shifted'' to Tuesday, June 19 at 4:45 p.m.'''

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 14

|-
|9:00 a.m. - 10:15 a.m.
|Food Webs I: Neo Martinez

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Food Webs II: Neo Martinez

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Modeling I: Aaron Clauset

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Spatial Ecology: Lauren Buckley

|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Agent-Based Modeling: Non-Technical Overview and Applications]] [[Aaron Frank]]

|-
|7:00 p.m. - 8:00 p.m.
| Tutorial: [[Stochastic search strategies and animal foraging]] Frederic Bartumeus (after dinner)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 15

|-
|9:00 a.m. - 10:15 a.m.
|Computational Complexity I: Cris Moore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Computational Complexity II: Phase Transitions Cris Moore

|-
|1:00 p.m. - 2:00 p.m.
|Tutorial: [[Artificial Neural Networks]]

|-
|2:00 p.m. - 4:00 p.m.
|Tutorial: [[Applications of non-commutative harmonic analysis]] (Risi)
|}

== Week Three - FINANCE/ECONOMY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 18
|-
|
|All events at SFI

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Eric Smith

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance/Economics II: Eric Smith

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance I: Blake LeBaron

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Computational Complexity III: Quantum Computing Cris Moore

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[Intro to Game Theory]] (Simon and Will B.)

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 19

|-
|9:00 a.m. - 10:15 a.m.
[[CSS07Part1.pdf | Patterrn Recognition and Markets I: ]]Greg Leibon

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Patterrn Recognition and Markets II: Greg Leibon

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance II: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing I: Una-May O'Reilly

|-
|4:45 p.m. - 5:45 p.m.
| Tutorial: [[ Closure Under Inversion]] Saleha Habibullah (in the Great Hall)

|-
|7:00 - ??
|PIZZA PARTY II (@ St. Johns)

|-
|8:15 p.m. - 9:30 p.m.
| Eine kleine nachtmusik [some art and music (not Mozart :-) with Tom in the Great Hall]

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 20

|-
|9:15 a.m. - 10:30 a.m.
| Information theory, measuring systems, etc. III: Tom Carter

|-
|10:45 a.m. - 12:00 p.m.
|Tutorial: [[Evolutionary Game Theory]] Jorge Gallego

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance III: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Pattern Recognition and Markets III: Greg Leibon
|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Simulating and analyzing biochemical networks with COPASI]] - [[Juergen Pahle]]

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[UML for Complex Systems]] - [[Brian Lawler]]

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 21

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance IV: Blake LeBaron

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Evolutionary Computing II: Una-May O'Reilly

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing III: Una-May O'Reilly

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[R Tutorial]] Rafal Raciborski

|-
|8:30 p.m. - Onward
|Cultural Night! (in the Great Hall)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 22

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics II: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Evolution I: David Krakauer

|-
|2:00 p.m. - 3:15 p.m.
| Tutorial: [[Introductory Graph Theory and simple algorithms]] (Amitabh Trehan)
|}

== Week Four - BIOLOGY/BBQ! ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 25

|-
|9:00 a.m. - 10:15 a.m.
|Allometry I: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology I: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 26

|-
|9:00 a.m. - 10:15 a.m.
|Allometry II: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology II: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 27

|-
|
|All events at SFI

|-
|1:30 p.m. - 2:45 p.m.
|Fitness Landscapes: Lauren Ancel Meyers

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Allometry III: Van Savage

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 28

|-
|9:30 a.m. - 11:00 a.m.
|Mathematica 6 intro @ SFI [[http://www.santafe.edu/education/application/mathematica07 Link]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|OPEN

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life for the evolution towards Artificial Intelligence: [http://virgil.gr Virgil Griffith]

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 29: FINAL POSTER DAY

|}

== Lecturers ==

'''Week 1:'''

Liz Bradley (Nonlinear Dynamics) 
Stephen Guerin/Owen Densmore (Agent Based Modeling) 
Alfred Hubler (Nonlinear Dynamics) 
Scott Page (Social Sciences/Modeling) 
Steen Rasmussen (Artificial Life) 

'''Week 2:'''

Mark Newman (Networks, Power Laws) 
Cris Moore (Computational Complexity) 
Jennifer Dunne (Food Webs) 
Neo Martinez (Food Webs) 
Doug Erwin (Paleobiology) 
Aaron Clauset (Modeling) 

'''Week 3:'''

Eric Smith (Finance/Economics) 
Doyne Farmer (Finance/Economics) 
Blake Lebaron (Finance) 
Una-May O’Reilly (Evolutionary Computing) 
Greg Leibon (Pattern Recognition in Market Data) 
Cris Moore (Statistical Mechanics) 
David Krakauer (Evolution) 

'''Week 4:'''

Van Savage (Allometry) 
Lauren Ancel-Myers (Networks, Evolution, Epidemiology) 

'''Projects'''

== Cafeteria Meal Schedule ==
Breakfast: Monday-Saturday 7:30am - 9:30am 
Continental Breakfast: Monday-Saturday 9:30am - 10am 
Lunch: Monday-Saturday 11:30am - 1:30pm 
Dinner: Monday-Sunday 5:00 pm - 6:30pm 
Brunch: Sunday 10:30am - 1:30pm

CSSS 2007 Santa Fe-Schedule

2007-06-21T22:20:02Z

Gleibon: /* Week Three - FINANCE/ECONOMY */

{{CSSS 2007 Santa Fe}}
'''CSSS 2007'''
__FORCETOC__
[[Media:CSSS_2007-v2-2.pdf|Full Schedule]]

'''This schedule will be updated frequently. Check this page often to make sure you have the latest version.'''

'''All CSSS events are open only to invited participants.'''

== Week One: MODELING/NONLINEAR DYNAMICS ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 4
|-
|
|All events at SFI
|-
|9:00 a.m. - 10:15 a.m.
|Opening Remarks: Dan Rockmore
|-
|10:15 a.m. - 10:45 a.m.
|Break
|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Liz Bradley
|-
|12:00 p.m. -1:30 p.m.
|Lunch
|-
|1:30 p.m. - 2:45 p.m.
|Nonlinear Dynamics II: Liz Bradley
|-
|2:45 p.m. - 3:15 p.m.
|Break
|-
|3:15 p.m. - 4:30 p.m.
|Student introductions & breaking the ice
|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 5
|-
|9:00 a.m. - 10:15 a.m.
|
|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics III: Liz Bradley

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life I: Steen Rasmussen

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Nonlinear Dynamics IV: Liz Bradley

|-
|7:00 pm - ??
|PIZZA PARTY! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
|
| Wednesday, June 6

|-
|
|All events at SFI

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:45 p.m. - 3:00 p.m.
|Artificial Life II: Steen Rasmussen

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:30 p.m. - 4:30 p.m.
|Social Sciences/Modeling I: Scott Page

|- bgcolor="#aaaaaa" align="center"
|
| Thursday, June 7

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling I: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics I: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Social Sciences/Modeling II: Scott Page

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Social Sciences/Modeling III: Scott Page

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[Discussion of Finite State Machines]], 2nd Floor Senior Seminar Room

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 8

|-
|9:00 a.m. - 10:15 a.m.
|Agent Based Modeling II: Stephen Guerin & Owen Densmore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Nonlinear Dynamics II: Alfred Hubler

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
| Information theory, Measuring Systems, etc.: Tom Carter

|-
|1:00 p.m.- 3:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 1:00 Lab Signup|signup]]

|-
|3:00 p.m. - 5:00 p.m.
|Nonlinear Dynamics Lab - w/Alfred Hubler [[Friday 3:00 Lab Signup|signup]]

|-
|5:00 p.m - 8:00 p.m.
|Calypso dinner at SFI

|}

== Week Two - NETWORKS/ECOLOGY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 11

|-
|9:00 a.m. - 10:15 a.m.
|Power Laws: Mark Newman

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Networks I: Mark Newman

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs I: Jennifer Dunne

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Paleobiology I: Doug Erwin

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[ Matlab tutorial ]]

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 12

|-
|8:30 a.m. - 10:30 a.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 8:30 Lab Signup|signup]]

|-
|9:15 a.m. - 10:15 a.m.
|Tutorial:[[Consciousness and/or visual processing]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Paleobiology II: Doug Erwin

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Paleobiology III: Doug Erwin

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Networks II: Mark Newman

|-
|4:30 p.m. - 6:30 p.m.
|Nonlinear Dynamics Lab - Alfred Hubler [[Tuesday 4:30 Lab Signup|signup]]

|-
|7.00pm - 7:50pm
|Tutorial:[[Eigenvectors and Eigenvalues]](new but finalised time!!)

|-
|8:00-??
|CINEMA NIGHT! (@ St. Johns)

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 13

|-
|
|All afternoon events at SFI

|-
|9:00 a.m. - 10:00 a.m.
|Tutorial: [[Cellular Automata]] (before leaving for SFI)

|-
|10:15 a.m. - 11:15 a.m.
| Information theory, Measuring Systems, etc. II: Tom Carter (before leaving for SFI)

|-
|12:00 p.m. -1:30 p.m.
|Lunch (at SFI)

|-
|1:30 p.m. - 2:45 p.m.
|Food Webs II: Jennifer Dunne

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Networks III: Mark Newman

|-
|7:00 p.m. - 8:00 p.m.
|'''Tutorial on "Closure Under Inversion" ''shifted'' to Tuesday, June 19 at 4:45 p.m.'''

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 14

|-
|9:00 a.m. - 10:15 a.m.
|Food Webs I: Neo Martinez

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Food Webs II: Neo Martinez

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Modeling I: Aaron Clauset

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Spatial Ecology: Lauren Buckley

|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Agent-Based Modeling: Non-Technical Overview and Applications]] [[Aaron Frank]]

|-
|7:00 p.m. - 8:00 p.m.
| Tutorial: [[Stochastic search strategies and animal foraging]] Frederic Bartumeus (after dinner)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 15

|-
|9:00 a.m. - 10:15 a.m.
|Computational Complexity I: Cris Moore

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Computational Complexity II: Phase Transitions Cris Moore

|-
|1:00 p.m. - 2:00 p.m.
|Tutorial: [[Artificial Neural Networks]]

|-
|2:00 p.m. - 4:00 p.m.
|Tutorial: [[Applications of non-commutative harmonic analysis]] (Risi)
|}

== Week Three - FINANCE/ECONOMY ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 18
|-
|
|All events at SFI

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Eric Smith

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance/Economics II: Eric Smith

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance I: Blake LeBaron

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Computational Complexity III: Quantum Computing Cris Moore

|-
|7:00 p.m. - 8:30 p.m.
| Tutorial: [[Intro to Game Theory]] (Simon and Will B.)

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 19

|-
|9:00 a.m. - 10:15 a.m.
[[CSS07Part1.pdf |Patterrn Recognition and Markets I: ]]Greg Leibon

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Patterrn Recognition and Markets II: Greg Leibon

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance II: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing I: Una-May O'Reilly

|-
|4:45 p.m. - 5:45 p.m.
| Tutorial: [[ Closure Under Inversion]] Saleha Habibullah (in the Great Hall)

|-
|7:00 - ??
|PIZZA PARTY II (@ St. Johns)

|-
|8:15 p.m. - 9:30 p.m.
| Eine kleine nachtmusik [some art and music (not Mozart :-) with Tom in the Great Hall]

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 20

|-
|9:15 a.m. - 10:30 a.m.
| Information theory, measuring systems, etc. III: Tom Carter

|-
|10:45 a.m. - 12:00 p.m.
|Tutorial: [[Evolutionary Game Theory]] Jorge Gallego

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Finance III: Blake LeBaron

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Pattern Recognition and Markets III: Greg Leibon
|-
|4:45 p.m. - 5:30 p.m.
|Tutorial: [[Simulating and analyzing biochemical networks with COPASI]] - [[Juergen Pahle]]

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[UML for Complex Systems]] - [[Brian Lawler]]

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 21

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics I: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Finance IV: Blake LeBaron

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Evolutionary Computing II: Una-May O'Reilly

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|Evolutionary Computing III: Una-May O'Reilly

|-
|7:00 p.m. - 8:30 p.m.
|Tutorial: [[R Tutorial]] Rafal Raciborski

|-
|8:30 p.m. - Onward
|Cultural Night! (in the Great Hall)

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 22

|-
|9:00 a.m. - 10:15 a.m.
|Finance/Economics II: Doyne Farmer

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Evolution I: David Krakauer

|-
|2:00 p.m. - 3:15 p.m.
| Tutorial: [[Introductory Graph Theory and simple algorithms]] (Amitabh Trehan)
|}

== Week Four - BIOLOGY/BBQ! ==

{| width="95%" border="1" cellpadding="4"
|- align="center"
| TIME
| ACTIVITY

|- bgcolor="#aaaaaa" align="center"
| 
| Monday, June 25

|-
|9:00 a.m. - 10:15 a.m.
|Allometry I: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology I: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Tuesday, June 26

|-
|9:00 a.m. - 10:15 a.m.
|Allometry II: Van Savage

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|Network Epidemiology II: Lauren Ancel Meyers

|-
|12:00 p.m. - 1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|OPEN

|-
|2:45 p.m. - 3:15 p.m.
|Break

|-
|3:15 p.m. - 4:30 p.m.
|OPEN

|- bgcolor="#aaaaaa" align="center"
| 
| Wednesday, June 27

|-
|
|All events at SFI

|-
|1:30 p.m. - 2:45 p.m.
|Fitness Landscapes: Lauren Ancel Meyers

|-
|3:00 p.m.
|Tea with SFI community

|-
|3:15 p.m. - 4:30 p.m.
|Allometry III: Van Savage

|- bgcolor="#aaaaaa" align="center"
| 
| Thursday, June 28

|-
|9:30 a.m. - 11:00 a.m.
|Mathematica 6 intro @ SFI [[http://www.santafe.edu/education/application/mathematica07 Link]]

|-
|10:15 a.m. - 10:45 a.m.
|Break

|-
|10:45 a.m. - 12:00 p.m.
|OPEN

|-
|12:00 p.m. -1:30 p.m.
|Lunch

|-
|1:30 p.m. - 2:45 p.m.
|Artificial Life for the evolution towards Artificial Intelligence: [http://virgil.gr Virgil Griffith]

|- bgcolor="#aaaaaa" align="center"
| 
| Friday, June 29: FINAL POSTER DAY

|}

== Lecturers ==

'''Week 1:'''

Liz Bradley (Nonlinear Dynamics) 
Stephen Guerin/Owen Densmore (Agent Based Modeling) 
Alfred Hubler (Nonlinear Dynamics) 
Scott Page (Social Sciences/Modeling) 
Steen Rasmussen (Artificial Life) 

'''Week 2:'''

Mark Newman (Networks, Power Laws) 
Cris Moore (Computational Complexity) 
Jennifer Dunne (Food Webs) 
Neo Martinez (Food Webs) 
Doug Erwin (Paleobiology) 
Aaron Clauset (Modeling) 

'''Week 3:'''

Eric Smith (Finance/Economics) 
Doyne Farmer (Finance/Economics) 
Blake Lebaron (Finance) 
Una-May O’Reilly (Evolutionary Computing) 
Greg Leibon (Pattern Recognition in Market Data) 
Cris Moore (Statistical Mechanics) 
David Krakauer (Evolution) 

'''Week 4:'''

Van Savage (Allometry) 
Lauren Ancel-Myers (Networks, Evolution, Epidemiology) 

'''Projects'''

== Cafeteria Meal Schedule ==
Breakfast: Monday-Saturday 7:30am - 9:30am 
Continental Breakfast: Monday-Saturday 9:30am - 10am 
Lunch: Monday-Saturday 11:30am - 1:30pm 
Dinner: Monday-Sunday 5:00 pm - 6:30pm 
Brunch: Sunday 10:30am - 1:30pm

File:CSS07Part1.pdf

2007-06-21T22:16:53Z

Gleibon: